BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G33385.2
Length=1256
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482281 jgi|Araly1|482281|fgenesh2_kg.4__1341__AT2G33385.1 843 0.0
> Ahg482281 jgi|Araly1|482281|fgenesh2_kg.4__1341__AT2G33385.1
Length=1141
Score = 843 bits (456), Expect = 0.0
Identities = 516/546 (95%), Gaps = 0/546 (0%)
Strand=Plus/Plus
Query 638 AGGATATGGGAAAAGCCCCACAATGTAGTTGGTCGCCAATTCCTCCTCTCCAACTTAGAG 697
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 596 AGGAAATGGGAAAAGCCCCACAATGTAGTTGGTCACCAATTCCTCCTCTCCAACTTAGAG 655
Query 698 GAGAACCGGTTCAAGACTTGACCACCAATTCTGGTTTTGTATCATTTGATATTACTTCAC 757
||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||
Sbjct 656 GAGAACCGGTTCAAGACTTAACCACCAATTCTGGCTTTGTATCTTTTGATATTACTTCAC 715
Query 758 GGCACATTGAAGGAAAGAGACTGGACAAAACGGTTTGGAACTTGCTAAATTTCTACGCAT 817
||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 716 GGCACGTTGAAGGAAAGAGACTAGACAAAACGGTTTGGAACTTACTAAATTTCTACGCAT 775
Query 818 GCGCTAAGTACCATATTAAGTGCTCGAGAGGGTACATACAGAGACGGATGAGAAAAAGAA 877
|| ||| |||||||| ||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 776 ACGTTAAATACCATATCAAGTGTTCGAGAGGGTACATACAGAGAAGGATGAGAAAAAGAA 835
Query 878 TGGAAACTTTAGTTAAGCTGCTAAATAACACAAGCCTAGAAGAAGAAGCTGCTCAAAATG 937
|||| | ||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 836 TGGACAGTTTGGTTAAGCTGCTAAATAACACAAACCTAGAAGAAGAAGCTGCTCAAAATG 895
Query 938 AAAACGGAAGATGCAAATACGTAAAGGAGTTTGTGAAGGTACCAAAAGGTAAATTGATGA 997
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 896 AAAACGGAAGATGCAAATACGTAAAGGAGTTTGTGATGGTACCAAAAGGCAAATTGATGA 955
Query 998 TGAAACAAAGATGCAAGGAGATGACAAGGAGAGTGAAGATAAGCAAGTTCCGGATCAAAA 1057
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 956 TGAAACAAAGATGCAAGGAGATGACAAGGAGAGTGAAGATAAGTAAGTTCCGGATCAAAA 1015
Query 1058 TCAACGGTTGTGCTCGGTTTCGATTCAATCAGCGGTGGATATCTCTCCCCAAATTCTCTT 1117
| ||||| ||||||||||||||||| ||||| |||||||||||| |||||||||||||||
Sbjct 1016 TTAACGGCTGTGCTCGGTTTCGATTTAATCAACGGTGGATATCTTTCCCCAAATTCTCTT 1075
Query 1118 CGAAACCATCAGATAAATCATACACAAAATTGGACTAAGTAATCACTTAACTTGGAAAGT 1177
||||||| ||| |||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1076 CGAAACCCTCAAATAAATCATACACAAAATTGGACTAAGTAACCTCTTAACTTGGAAAGT 1135
Query 1178 CTCAAG 1183
||||||
Sbjct 1136 CTCAAG 1141
Score = 789 bits (427), Expect = 0.0
Identities = 547/602 (91%), Gaps = 19/602 (3%)
Strand=Plus/Plus
Query 31 ATGGCATATCTCGAAAGAGCCTCTCCAACGTTGAAAGAAACACTCCTCAAGATATACCGT 90
|||||||||||||||||||| |||||| || | |||||||||||||||||||||||||||
Sbjct 1 ATGGCATATCTCGAAAGAGCATCTCCAGCGCTAAAAGAAACACTCCTCAAGATATACCGT 60
Query 91 GCTGAAAAACCTATTGAGGTCGATCAACATTTCCATGAGTTTGGTTCGATTGAATACCAT 150
||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||
Sbjct 61 GCTGAAAAACCTATTGAGGTCGATCAACATTTCCACGAGTTTGGTTCGATTCAATATCAC 120
Query 151 ATCAAGTACTCGGTTTCGGATCCAAATATTGTGCATGTATCGACGTCGACGTTGCTTGAG 210
||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||
Sbjct 121 ATCAAGTACTCGGTTTCGGATCCAAGTATTGTCCACGTATCGACGTCGACGTTGCTTGAG 180
Query 211 ACACAAGGAGCAGTGACATTGAAGGAGATTTCAAGTTACACTTATGAGGTGATTAAGAAT 270
||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 181 ACACAAGGAGCGGTGACATTGAAGGAGATTTCAAGTCAGACTTATGAGGTGATTAAGAAT 240
Query 271 ATTGGAGTTGGTGTGATTGACATCGTTGATCCACCAAGATTAGGGTTTCAATTGACCCTT 330
|||| ||||||||||||||| || ||||||||||||||||||||||||||||||||| ||
Sbjct 241 ATTGCAGTTGGTGTGATTGATATTGTTGATCCACCAAGATTAGGGTTTCAATTGACCATT 300
Query 331 GGCCTAAACCTTGATAATATACCACGTGGCAAAGAAGCGATTAAAATCATTACAAGGATT 390
|| | |||||||||||||||||||||| |||| |||||||||||||||||||| ||||
Sbjct 301 GGTATTCACCTTGATAATATACCACGTGGAAAAGGAGCGATTAAAATCATTACAAAGATT 360
Query 391 TCTGAACTACAAGCGATAATATTAAGTAGCCAACTAAAAGAGATGCTGAGA-AGTTTAAA 449
|||||| |||||||||||||||| |||| |||||||||||||||||||||| | ||| ||
Sbjct 361 TCTGAAATACAAGCGATAATATTGAGTAACCAACTAAAAGAGATGCTGAGACA-TTTGAA 419
Query 450 TTTTCAAGATGATTCACGATCGATCAA---CAACAT-----------G-CCCATCAGGAT 494
||||||||||||||||||| ||||||| ||||| | ||||||| |||
Sbjct 420 TTTTCAAGATGATTCACGACCGATCAATAACAACAACAACAACAACAGGCCCATCAAGAT 479
Query 495 TGTTTATCACCCAAGTGAACCTTTCTACGTCTTTAAACAGCCGGAA-AAAATCACGGCCG 553
|||||||||||||||||||||||| ||||||||||||||| | || |||||||||||||
Sbjct 480 TGTTTATCACCCAAGTGAACCTTTTTACGTCTTTAAACAGATG-AAGAAAATCACGGCCG 538
Query 554 TGTTTCCGATGAATTTTAAAGACAATTCGGATGTGGTCATCGCCACGTCATTCTTCCAGG 613
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 539 TGTTTCCGATGAATTTTAAAGACAATTCGGATGTGGTCATTGCCACGTCATTCTTCCAGG 598
Query 614 AA 615
||
Sbjct 599 AA 600
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46929310827
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5