BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G33390.1
Length=1140
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482282 jgi|Araly1|482282|fgenesh2_kg.4__1342__AT2G33390.1 691 0.0
Ahg482283 jgi|Araly1|482283|fgenesh2_kg.4__1343__AT2G33400.1 556 9e-158
> Ahg482282 jgi|Araly1|482282|fgenesh2_kg.4__1342__AT2G33390.1
Length=478
Score = 691 bits (374), Expect = 0.0
Identities = 447/480 (93%), Gaps = 14/480 (3%)
Strand=Plus/Plus
Query 299 TTAGGGTTTATGAATGATCAGGT-GGTATTTGGTATTTGACATGAATTAGGGAAC-ACGA 356
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| | |
Sbjct 1 TTAGGGTTTATGAATGATCAGGTGGGT-TTTGGTATTTGACATGAATTAGGGAACAAAAA 59
Query 357 G-TGATATCTCTATCTTCTCCAGATTGTTTA-AGCTTGGGGTTTAGTTTCCATAGATTG- 413
| | | |||||||||||||||||||||||| ||||| |||| || |||||||||||||
Sbjct 60 GAT-CTCTCTCTATCTTCTCCAGATTGTTTAGAGCTTTGGGTCTACTTTCCATAGATTGA 118
Query 414 -------AAGATTTGCTATGGATACGGGTCGTGGAGAGGGTAAAGAAGCTAATGGATGTG 466
|||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 119 TTTTTATAAGATTTGCTATGGATACGGCTCGTGGAGAGGGTAAAGAAGCTAATGGATGTG 178
Query 467 AGAATAAGGCTATAGTTAGTTTAAATAGCAGTGAAATTGAAGATCAAATCTTTGAGGAAG 526
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 179 AGAATAAGGCTATAGTTAGTCTAAATAGCAGTGAAATTGAAGATCAAATCTCTGAGGAAG 238
Query 527 AAGAAAGTGAGTCACAATGTTTATTGCCTCCAAGGAAAGGAGGCATGTCTAGAAGCACTG 586
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 239 AAGAAAGTGAGTCACAATGTTTATTGCCTCCAAGGAAAGGAGGTATGTCCAGAAGCACTG 298
Query 587 ACAAGATTAAGAGGACTGTGCAGTGGAATGACATTAAAGGAGACAATCTTGCTGAGGTTT 646
||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 299 ACAAGATTAAGCGGACTGTGCAGTGGAATGACAACAAAGGAGACAATCTTGCTGAGGTTT 358
Query 647 TAGTTTATGAACCAAGCGAAGTTAGCGATACAGAGGACGATGATTCAGATTCCTGCATCT 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 359 TAGTTTATGAACCAAGCGAAGTTAGCGATACAGAGGACGATGATTCAGATTCCTGTATCT 418
Query 707 GCACAATTATGTAGTCCACCAATCCGCAATCAACCACCATTAACATGGAGTTTAACAATG 766
||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||
Sbjct 419 GCACAATTATGTAGTCCTCCAACCCACAATCAACCACCATTAACATGGAGTTTAACAATG 478
> Ahg482283 jgi|Araly1|482283|fgenesh2_kg.4__1343__AT2G33400.1
Length=1466
Score = 556 bits (301), Expect = 9e-158
Identities = 373/406 (92%), Gaps = 11/406 (3%)
Strand=Plus/Minus
Query 734 AATCAACCACCATTAACATGGAGTTTAACAATGAGCTCGTCCTTGTAATCTGACTTCTTT 793
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1466 AATCAACCACCATTAACATGGAGTTTAACAATGAGCTCGTCCTTGTA-TCTGACTTCTTT 1408
Query 794 TCAGCCATCAGTTTTTGTGAGGACAGACAAACGAGAACTTGAGCGATTGGGCATCACAAT 853
||||| |||||||||||||||||||||| ||||||||||| | ||||||| | |||||||
Sbjct 1407 TCAGCAATCAGTTTTTGTGAGGACAGACGAACGAGAACTTAAACGATTGGACTTCACAAT 1348
Query 854 CATGTAACTGTCTGATTTTTATGCTAAGGTGACTTCTGACAAGAAGCCAGTCCAAACAAG 913
||||||| |||||||||||| |||| ||| |||||||||||||||||||||||||||||
Sbjct 1347 CATGTAATTGTCTGATTTTTGTGCTCAGG--ACTTCTGACAAGAAGCCAGTCCAAACAAG 1290
Query 914 GGATTTAGACTCATAAGCTATATCAGATTGTCTCATCTCAGTGACAAGAGTGAGTATATA 973
||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1289 AGATGTAGACTCATAAGCTATATCAGATTGTCTCATCTCAGTGACAGGAGTGAGTATATA 1230
Query 974 GATTATTATTGCTGTATTGTTCAATAGAGGCTGATCTTCAAAGCGAAGATCATCGAGTGC 1033
|||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||
Sbjct 1229 GATTATTATTGCTGTATTGTTCAATAGAAGCTGATCTTCAAAGCGAAGATCTTTGAGTGA 1170
Query 1034 TGTTTGATTTGACAGTGTTTTGATAGTAAACTATGTATCTGTTTCT-CGAACATACACAC 1092
||||||||||||||| ||| |||||||| |||||||| ||||||| | |||||||||||
Sbjct 1169 TGTTTGATTTGACAG-GTTCTGATAGTATACTATGTAAGTGTTTCTGC-AACATACACAC 1112
Query 1093 TTGTTAAGTTGTAAGTATAATATGCAGCAATTTATTATTTTTTCTC 1138
|||||| | |||||||||||||||||||| | |||||||||||
Sbjct 1111 TTGTTA--T---AAGTATAATATGCAGCAATTCAATATTTTTTCTC 1071
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42507052455
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5