BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G33400.1
Length=1573
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482283 jgi|Araly1|482283|fgenesh2_kg.4__1343__AT2G33400.1 1256 0.0
Ahg482282 jgi|Araly1|482282|fgenesh2_kg.4__1342__AT2G33390.1 63.9 3e-09
> Ahg482283 jgi|Araly1|482283|fgenesh2_kg.4__1343__AT2G33400.1
Length=1466
Score = 1256 bits (680), Expect = 0.0
Identities = 814/877 (93%), Gaps = 15/877 (2%)
Strand=Plus/Plus
Query 78 TCTTCTTCTTCCTCTCAAGTATCGAAACCG-AAACAGAGAAACATCACCACCAATGGGAT 136
||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||
Sbjct 55 TCTTCTTCTTCCTCTCAAGAATCAAAACCGAAAACAGAGAAACATCACCACCAATGGGAT 114
Query 137 GTTTTATGGGTTGTTTCGGTCTCTCTTCCAACAAAAAACGCAGAAATTCCATTAGGAAGA 196
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 115 GTTTTATGGGTTGTTTCGGTCTCTCTTCCAACAAAAAACGCAGAAACTCCATTAGGAAGA 174
Query 197 TCCTTCCTCGAGATCAAAGAATCTGTAGCTATGAGCCGCTGCTTTCTTCAGATCCGACAG 256
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 175 TCCTTCCTCGAGATCAAAGAATCTGTAGCTATGAACCGCTACTTTCTTCAGATCCGACAG 234
Query 257 ATTTCAGTACTGTTTCAGATAACCCTGAAAAGATCTCAAATTCGAACCTCaggagtgagg 316
||||||||||| ||| ||||||||||||||||||||||||||||||||||||| | |
Sbjct 235 ATTTCAGTACTCTTTTAGATAACCCTGAAAAGATCTCAAATTCGAACCTCAGGTCCGCTG 294
Query 317 t-aggggaggaggaggagaagaagaaggtgactaagaagacgaggaagagagTCAGATTT 375
| ||||| | || |||| || |||||||||||| ||||||||||||||||||| |||||
Sbjct 295 TCAGGGGTGAAGT-GGAGGAGGAGAAGGTGACTAGGAAGACGAGGAAGAGAGTCCGATTT 353
Query 376 GACTTGAATGTACAAACCTATGAACCTATTGTACCTTCAAGAT-ATGAGAATGCTTGCAG 434
|||||||||||||||||||||||||||||| ||||||| | || ||||||||||||||||
Sbjct 354 GACTTGAATGTACAAACCTATGAACCTATTCTACCTTCTA-ATTATGAGAATGCTTGCAG 412
Query 435 TGATGATGAAGAGGGGAAAGGAGGAAGAAGCAAGGGATCTTCGGCTATAGATAAGAAACC 494
||||||||||||||||| ||||| ||||||||| ||||| |||| ||| ||||||| |||
Sbjct 413 TGATGATGAAGAGGGGATAGGAGAAAGAAGCAATGGATCGTCGGTTATCGATAAGAGACC 472
Query 495 AGAGGATCTAAGCAGTAGATCTGTGTATCCTTCAAACTATAGATACCACAACTGTGTGGA 554
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 473 AGAGGATCTGAGCAGTAGATCTGTGTATCCTTCAAACTATAGATACCACAATTGTGTTGA 532
Query 555 TAGTTTTGAGGATGAAGATGATGAAATGGGTTATGGAGAGAGTGATTTGGAAGATGAAGA 614
|||||||||||||||||| || || ||||||||||||||||||||||||||||||||||
Sbjct 533 TAGTTTTGAGGATGAAGACGA--AA-TGGGTTATGGAGAGAGTGATTTGGAAGATGAAGA 589
Query 615 CTATTACACCGATAATGAAAACGACTatgaagatgatgctgatgatgaagatgaagaaga 674
||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 590 CTATTACACAGATGATGAAAACGACTATGAAGATGATGCTGCTGATGAAGATGAAGAAGA 649
Query 675 agaaga-agagaatgaGCAGGACGTGGCTCCTCTTTTGAATCCAGTGGAGAATCTTGCTC 733
|||||| | || || ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 650 AGAAGACA-AG---GACCAGGACGTGACTCCTCTTTTGAATCCAGTGGAGAATCTTGCTC 705
Query 734 AGTGGAAAGCGGTTAAAGCAAGGCCAGTGAAAGTTAAACGGGTAATGAAAGAGAATGTTG 793
||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 706 AGTGGAAAGCGGTTAAAGCAAGGCCGGTGAGAGTTAAACGGGTAATGAAAGAGAATGTTG 765
Query 794 AAG-AGGATATGGATGATCAAGCAAAACCACTACTGAAGGAGATAATCGTTAATACTAGC 852
||| || ||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 766 AAGCAG-ATATGGATGATCAAGAAAAACCACTACTGAAGGAGATAATCGTCAATACTAGC 824
Query 853 CTTTCCAATTGGTTGGCCTCACCAAAGAGTCTTCATGCGAATGGTTCATCGAAGAGATCC 912
||||| ||||||||| |||||||||||||| |||||| ||||||||| ||||||||||||
Sbjct 825 CTTTCAAATTGGTTGACCTCACCAAAGAGTTTTCATGGGAATGGTTCGTCGAAGAGATCC 884
Query 913 CCAATTGTGGATATCACCAACATGGAGAACAGGTAAA 949
||||||||||||||||||||||||||||||| ||||
Sbjct 885 TCAATTGTGGATATCACCAACATGGAGAACAGATAAA 921
Score = 712 bits (385), Expect = 0.0
Identities = 512/569 (90%), Gaps = 25/569 (4%)
Strand=Plus/Plus
Query 1000 TTGTTTGTCTTTGTAGCATTTCTGATTCTTTGTGTGTGTATGGATGGAGGTTTGTATTTG 1059
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 922 TTGTTTGTCTTTGTACCATTTCTGATTCTTTCTGTGTGTATGGATGGAGGTTTGTATCGG 981
Query 1060 TTTTCCCTTTTAGGGCTATTCTTCCCACTGGTTGTTTCTGCAACTACATCTTGATACAAG 1119
||||||||||| ||| || | ||||||||||||||| ||||||||| |||
Sbjct 982 TTTTCCCTTTTCGGG------TT---A----TTGTTTCTGCAACTAAATCTTGATA-AAG 1027
Query 1120 TTGTGATCTTTCAACTTTTTTGGATCAAGTACTATAAGAAGAAGAGAAAAAATAATAAAT 1179
||||||||||||||| |||||||||||| |||||||| |||| ||||||||||| | |||
Sbjct 1028 TTGTGATCTTTCAACGTTTTTGGATCAACTACTATAAAAAGAGGAGAAAAAATATTGAAT 1087
Query 1180 TGCTGCATATTATACTTACAACTTAACAAGTGTGTATGTTCG-AGAAACAGATACATAGT 1238
||||||||||||||||| | ||||||||||||||||| | ||||||| ||||||||
Sbjct 1088 TGCTGCATATTATACTT---A--TAACAAGTGTGTATGTT-GCAGAAACACTTACATAGT 1141
Query 1239 TTACTATCAAAACACTGTCAAATCAAACAGCACTCGATGATCTTCGCTTTGAAGATCAGC 1298
|||||||| ||| ||||||||||||||| ||||| | ||||||||||||||||||||||
Sbjct 1142 ATACTATCAGAAC-CTGTCAAATCAAACATCACTCAAAGATCTTCGCTTTGAAGATCAGC 1200
Query 1299 CTCTATTGAACAATACAGCAATAATAATCTATATACTCACTCTTGTCACTGAGATGAGAC 1358
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1201 TTCTATTGAACAATACAGCAATAATAATCTATATACTCACTCCTGTCACTGAGATGAGAC 1260
Query 1359 AATCTGATATAGCTTATGAGTCTAAATCCCTTGTTTGGACTGGCTTCTTGTCAGAAGTCA 1418
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 1261 AATCTGATATAGCTTATGAGTCTACATCTCTTGTTTGGACTGGCTTCTTGTCAGAAGT-- 1318
Query 1419 CCTTAGCATAAAAATCAGACAGTTACATGATTGTGATGCCCAATCGCTCAAGTTCTCGTT 1478
||| |||| |||||||||||| |||||||||||||| | ||||||| | |||||||||||
Sbjct 1319 CCTGAGCACAAAAATCAGACAATTACATGATTGTGAAGTCCAATCGTTTAAGTTCTCGTT 1378
Query 1479 TGTCTGTCCTCACAAAAACTGATGGCTGAAAAGAAGTCAGATTACAAGGACGAGCTCATT 1538
|||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1379 CGTCTGTCCTCACAAAAACTGATTGCTGAAAAGAAGTCAGA-TACAAGGACGAGCTCATT 1437
Query 1539 GTTAAACTCCATGTTAATGGTGGTTGATT 1567
|||||||||||||||||||||||||||||
Sbjct 1438 GTTAAACTCCATGTTAATGGTGGTTGATT 1466
> Ahg482282 jgi|Araly1|482282|fgenesh2_kg.4__1342__AT2G33390.1
Length=478
Score = 63.9 bits (34), Expect = 3e-09
Identities = 34/34 (100%), Gaps = 0/34 (0%)
Strand=Plus/Minus
Query 1535 CATTGTTAAACTCCATGTTAATGGTGGTTGATTG 1568
||||||||||||||||||||||||||||||||||
Sbjct 478 CATTGTTAAACTCCATGTTAATGGTGGTTGATTG 445
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58925609015
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5