BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G33430.1
Length=1038
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482286 jgi|Araly1|482286|fgenesh2_kg.4__1346__AT2G33430.1 1232 0.0
Ahg473448 jgi|Araly1|473448|fgenesh2_kg.1__3402__AT1G32580.1 326 3e-88
> Ahg482286 jgi|Araly1|482286|fgenesh2_kg.4__1346__AT2G33430.1
Length=868
Score = 1232 bits (667), Expect = 0.0
Identities = 725/754 (96%), Gaps = 0/754 (0%)
Strand=Plus/Plus
Query 1 CAAAACCCTATCCACTTTACTCTAAACCTCCATTACCTTCGTCTTTCTTCCTCAGTCGCC 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1 CAAAACCCTATCCACTTTACTCTAAACCTCCATTGCCTTCGTCTTTCTTCCTCAGTCGCC 60
Query 61 CTACAATGGCTTTGCCTTTGTCTGGCACGCGCCACCTCACGCGCGCTCTCCTCTCTAATG 120
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 61 CTACAATGGCCTTGCCTTTGTCTGGCACGCGCCACCTCACGCGAGCTCTCCTCTCTAATG 120
Query 121 TCACTCTTATGGCTCCTCCTCGGATTCCTTCCTCTGTTCACTACGGTGGATCTCGGTTAG 180
|||| || || ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 121 TCACCCTAATAGCTCCTCCTCGGATTCCTTCCTCTGTTCACTGCGGTGGATCTCGGTTAG 180
Query 181 GTTGTTCGACCCGGTTCTTCTCAATTCGATGTGGAGCTAACCGGTCAGGTTCTACTTACT 240
|||| ||||||||||| || ||||||||||| ||||||||||||||||| ||| ||||||
Sbjct 181 GTTGCTCGACCCGGTTTTTTTCAATTCGATGCGGAGCTAACCGGTCAGGCTCTGCTTACT 240
Query 241 CGCCGCTTAACTCTGGCTCTAACTTTAGTGATCGGCCTCCGACGGAGATGGCTCCTTTGT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CGCCGCTTAACTCTGGCTCTAACTTTAGTGATCGGCCTCCGACGGAGATGGCTCCTTTGT 300
Query 301 TTCCGGGATGCGATTATGAGCACTGGCTTATTGTTATGGATAAACCTGGCGGGGAAGGCG 360
|||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 301 TTCCGGGATGTGATTATGAGCACTGGCTTATTGTTATGGATAAACCTGGCGGTGAAGGTG 360
Query 361 CGACTAAGCAGCAGATGATTGATTGTTACATTCAAACCCTAGCGAAAGTCGTTGGAAGTG 420
|||| |||||||||||||||||||| |||||||||||| |||| ||||||||||||||||
Sbjct 361 CGACGAAGCAGCAGATGATTGATTGCTACATTCAAACCTTAGCTAAAGTCGTTGGAAGTG 420
Query 421 AGGAAGAGGCGAAGAAGCGAATCTACAATGTTTCATGTGAGAGGTATTTAGGGTTTGGTT 480
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 421 AGGAAGAGGCGAAGAAGCGAATCTACAATGTTTCGTGTGAGAGGTATTTAGGGTTTGGCT 480
Query 481 GTGAGATTGATGAAGAGACATCCACTAAGCTTGAAGGTTTACCAGGTGTTCTGTTTGTGC 540
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 481 GTGAGATTGATGAAGAGACATCGACTAAGCTTGAAGGTTTACCTGGTGTTCTGTTTGTGC 540
Query 541 TTCCAGATTCCTATGTGGATCCTGAAAACAAAGATTATGGAGCTGAGCTGTTTGTTAATG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TTCCAGATTCCTATGTGGATCCTGAAAACAAAGATTATGGAGCTGAGCTGTTTGTTAATG 600
Query 601 GAGAGATAGTCCAACGATCACCAGAGAGGCAGAGGCGGGTTGAGCCACAGCCGCAGAGAG 660
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 601 GAGAGATAGTCCAACGATCACCAGAGAGGCAGAGGCGAGTTGAGCCGCAGCCGCAGAGAG 660
Query 661 CCCAAGATAGACCGAGATACAATGACAGAACTCGTTACTCTCGCCGCAGAGAAAACACAA 720
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CCCAAGATAGACCAAGATACAATGACAGAACTCGTTACTCTCGCCGCAGAGAAAACACAA 720
Query 721 GATGAACTGTAACTGAAGATGGTATACATACACC 754
||||||||||||||||||| |||||||| |||||
Sbjct 721 GATGAACTGTAACTGAAGAAGGTATACACACACC 754
> Ahg473448 jgi|Araly1|473448|fgenesh2_kg.1__3402__AT1G32580.1
Length=809
Score = 326 bits (176), Expect = 3e-88
Identities = 329/403 (82%), Gaps = 10/403 (2%)
Strand=Plus/Plus
Query 237 TACTCGCCGCTTAACTCTGGCTCTAACTTT-AGTGATCGGCCTCCGACGGAGATGGCTCC 295
||||| || || || || || || || ||| || || || || || || |||||||| ||
Sbjct 253 TACTCTCCTCTCAAATCCGGTTCGAA-TTTCAGCGACCGACCACCTACAGAGATGGCGCC 311
Query 296 TTTGTTTCCGGGATGCGATTATGAGCACTGGCTTATTGTTATGGATAAACCTGGCGGGGA 355
|||||||| || |||||||||||||| ||||||||||| ||||| |||||||| |||||
Sbjct 312 GTTGTTTCCTGGCTGCGATTATGAGCATTGGCTTATTGTAATGGACAAACCTGGAGGGGA 371
Query 356 AGGCGCGACTAAGCAGCAGATGATTGATTGTTACATTCAAACCCTAGCGAAAGTCGTTGG 415
| ||| || ||||| || |||||||||||||| ||||||||||||| ||| || | ||
Sbjct 372 AAACGCTACAAAGCAACAAATGATTGATTGTTATGTTCAAACCCTAGCTAAAATCCTCGG 431
Query 416 AAGTGAGGAAGAGGCGAAGAAGCGA-ATCTACAATGTTTCATGTGAGAGGTATTTAGGGT 474
||||||||||| || |||||| | || || ||||| || ||||| |||||||| || |
Sbjct 432 CAGTGAGGAAGAAGCTAAGAAG-AAGATTTATAATGTATCGTGTGAAAGGTATTTTGGAT 490
Query 475 TTGGTTGTGAGATTGATGAAGAGACATCCACTAAGCTTGAAGGT-TTACCAGGTGTTCTG 533
|||||||||||||||||||||||||||| | ||| ||||||| || || ||||||||
Sbjct 491 TTGGTTGTGAGATTGATGAAGAGACATCAAATAAATTTGAAGGACTT-CCTGGTGTTCT- 548
Query 534 TTT-GTGCTT-CCAGATTCCTATGTGGATCCTGAAAACAAAGATTATGGAGCTGAGCTGT 591
||| || || ||||| || ||||| |||| || ||||||||||| ||||||||||| |
Sbjct 549 TTTCGTT-TTACCAGACTCTTATGTTGATCAAGAGAACAAAGATTACGGAGCTGAGCTTT 607
Query 592 TTGTTAATGGAGAGATAGTCCAACGATCACCAGAGAGGCAGAG 634
|||| |||||||| |||||||||||| | |||||||| |||||
Sbjct 608 TTGTGAATGGAGAAATAGTCCAACGACCTCCAGAGAGACAGAG 650
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38618514921
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5