BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G33450.1
Length=626
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933932 jgi|Araly1|933932|scaffold_401920.1 721 0.0
Ahg919125 jgi|Araly1|919125|scaffold_100406.1 390 5e-108
> Ahg933932 jgi|Araly1|933932|scaffold_401920.1
Length=474
Score = 721 bits (390), Expect = 0.0
Identities = 441/465 (95%), Gaps = 6/465 (1%)
Strand=Plus/Plus
Query 23 GAAGTAACAGCAACCAAAAATGACGACAATGGCGACACAAGGCGCTTGGCTACGAATGAC 82
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 2 GAAGTAACAGCAACCAAAAATGACGACAATGGCGACGCAAGGGGCTTGGCTACGAATGAC 61
Query 83 CTCATCAGCC-AAGTCCATGACCAAGTCAACCGTGACTTCAAAGGAGCTTGGATTCCTCA 141
||||||| || |||||| || | ||||||||||||||||||||||||||||| |||||||
Sbjct 62 CTCATCA-CCGAAGTCCGTGGCTAAGTCAACCGTGACTTCAAAGGAGCTTGGGTTCCTCA 120
Query 142 CCTCCCAGCTCAGCGGCTTAAGAATCTCAT-ATACTCCCAGTGACGTCATCAACCGTATC 200
||||||||||||||||| |||||||||| | | ||||||||||||||||||||||||||
Sbjct 121 CCTCCCAGCTCAGCGGCATAAGAATCTC-TCACGCTCCCAGTGACGTCATCAACCGTATC 179
Query 201 TCCCTTCCTTCGTTCCCCGGGATTCAGCCAATCGTCGCACGTAGAATCTGCCCTTTTACT 260
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TCCGTTCCTTCCTTCCCCGGGATTCAGCCAATCGTCGCACGTAGAATCTGCCCTTTTACT 239
Query 261 GGGAAGAAAGCAAACAGAGCAAACAAAGTTTCATTCTCTAACCACAAGACCAAGAAGTTG 320
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 240 GGGAAGAAAGCAAACAGAGCAAACAAAGTTTCTTTCTCTAACCACAAGACCAAGAAGTTG 299
Query 321 CAATTCGTCAACTTACAATACAAGAGAGTTTGGTGGGAAGCTGGCAAACGTTTTGTCAAA 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CAATTCGTCAACTTACAATACAAGAGAGTTTGGTGGGAAGCTGGCAAACGTTTTGTCAAA 359
Query 381 CTTCGTTTATCAACTAAGGCTTTGAAGACCATTGAGAAGAACGGACTCGACGCTGTTGCC 440
|||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||
Sbjct 360 CTTCGTTTATCAACTAAGGCTTTGAAGACCATTGAGAAAAACGGACTTGATGCTGTTGCC 419
Query 441 AAGAAAGCCGGCATTGATCTTCGCAAGAAATAGATA-T-GATGAT 483
|||||||||||||| || ||||||||||||||| || | ||||||
Sbjct 420 AAGAAAGCCGGCATAGACCTTCGCAAGAAATAGCTAATTGATGAT 464
> Ahg919125 jgi|Araly1|919125|scaffold_100406.1
Length=461
Score = 390 bits (211), Expect = 5e-108
Identities = 310/358 (87%), Gaps = 6/358 (2%)
Strand=Plus/Plus
Query 120 TCAAAGGAGCTTGGATTC-CTCACCTCCCAGCTCAGCGGCTTAAGAATCTCATATACTCC 178
|||| |||||| || ||| || || ||||| ||||||||| ||||||| ||| || |
Sbjct 84 TCAACGGAGCTCGG-TTCTCTGACTTCCCAACTCAGCGGCGTAAGAATTTCACATGGTTA 142
Query 179 CAGTGACGTCATCAACCGTATCTCCCTT-CCTT-CGTTCCCCGGGATTCAGCCAATCGTC 236
|||||| | |||||| ||||| |||| ||| || ||||| | || || ||||||
Sbjct 143 CAGTGATGCCATCAATCGTAT-AACCTTATCTTCCG-TCCCCTCTCTCCAACCCATCGTC 200
Query 237 GCACGTAGAATCTGCCCTTTTACTGGGAAGAAAGCAAACAGAGCAAACAAAGTTTCATTC 296
|| |||||||||||||||||||| |||||||||||||||||||| |||||||| || |||
Sbjct 201 GCTCGTAGAATCTGCCCTTTTACGGGGAAGAAAGCAAACAGAGCTAACAAAGTGTCCTTC 260
Query 297 TCTAACCACAAGACCAAGAAGTTGCAATTCGTCAACTTACAATACAAGAGAGTTTGGTGG 356
|||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||
Sbjct 261 TCTAACCACAAGACCAAGAAGTTGCAATTCGTCAACTTGCAATACAAAAAAGTTTGGTGG 320
Query 357 GAAGCTGGCAAACGTTTTGTCAAACTTCGTTTATCAACTAAGGCTTTGAAGACCATTGAG 416
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 321 GAAGCTGGCAAACGTTTTGTCAAACTTCGTTTATCAACCAAGGCCTTGAAGACCATTGAG 380
Query 417 AAGAACGGACTCGACGCTGTTGCCAAGAAAGCCGGCATTGATCTTCGCAAGAAATAGA 474
||||| || ||||| ||||||||||||||||| ||||| |||||||| ||||| ||||
Sbjct 381 AAGAATGGCCTCGATGCTGTTGCCAAGAAAGCTGGCATAGATCTTCGTAAGAAGTAGA 438
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22911873117
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5