BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G33460.1
Length=851
Score E
Sequences producing significant alignments: (Bits) Value
Ahg345096 jgi|Araly1|345096|fgenesh1_pg.C_scaffold_4001438 1033 0.0
> Ahg345096 jgi|Araly1|345096|fgenesh1_pg.C_scaffold_4001438
Length=672
Score = 1033 bits (559), Expect = 0.0
Identities = 638/676 (94%), Gaps = 5/676 (1%)
Strand=Plus/Plus
Query 177 ATGGCGACGACAATGAAGGGTCTTCTTAAGGGCCTTCGTTACATTACTCAGATTTTTGAT 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGACGACAATGAAGGGTCTTCTTAAGGGCCTTCGTTACATTACTCAGATTTTTGAT 60
Query 237 GAAGAGAAAGAGCAGGAGATGCAGATAGGATTTCCGACCGATGTAAAGCATGTTGCCCAC 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAAGAGAAAGAGCAGGAGATGCAGATAGGATTTCCGACCGATGTAAAGCATGTTGCCCAC 120
Query 297 ATTGGCTCCGACGGTCCAACCAACACCACACCAAGCTGGATGAATGACTTTAAAACTCAA 356
||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||||
Sbjct 121 ATTGGCTCCGACGGTCCAACCAACAACACGCCAAGCTGGATGAATGACTTTAAACCTCAA 180
Query 357 GAACATGAGAAAGGTCAAGTCGTTTCCAGGGGAAATTCCAACAAATACAACCCGCAAGGG 416
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 181 GAACATGAGAAAGGTCAAGTCGTTTCCAGGGGAAATTCAAACAAATACAACCCGCAAGGG 240
Query 417 ACGAACCAACGTGGAGCCGGGCTAAAAGAGTTACTGCCTTCGAACACAAACGAGAAACCG 476
| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 241 ATGAACCAACGTGGAGCCGGGCTAAAAGAGTTACTGCCTTCGAACACCAACGAGAAACCA 300
Query 477 AAACAGAAAACAAGGCGGAAACCCGGAGGAGCAGCTTCTCCAAATCATAA-CGGGTCTCC 535
||||| |||||||||||||||||||| ||||||||||||||||||| ||| |||||||||
Sbjct 301 AAACATAAAACAAGGCGGAAACCCGGGGGAGCAGCTTCTCCAAATC-TAAACGGGTCTCC 359
Query 536 GCCTAGAAAAAGTAGCGGAAATGCTGCATCATCAGATGAACCATCAAAGCATTCAAGACA 595
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 360 GCCTAGAAGAAGTAGCGGAAGTGCTGCATCATCAGATGAACCATCAAAGCATTCAAGACA 419
Query 596 TAACCGAAGCGCACACGGGTCAACAGACTCATCGAATGATCAAGAACCATCAGTTCGCAG 655
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||
Sbjct 420 TAACCGAAGCGCACACGGGTCAATGGACTCATCGAATGATCAAGAACCTTCAGTTCGTAG 479
Query 656 AAGGCGTGGTGGTATCCCGGCTCCAGACACAGAAGTTCCTAATCAAATACCTGATGGTTC 715
|||| | |||||||||||||||| ||||| |||||| ||||||| | ||||||||||
Sbjct 480 GAGGCATTGTGGTATCCCGGCTCCTGACACGGAAGTTTCTAATCATCTTGCTGATGGTTC 539
Query 716 AGCTCCTCCACGGAAGGCTACATCGCGTCCTAGGAAACTAAAAGGATCATCAGCAGGAGG 775
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 540 AGCTCCTCCACGGAAGGCTACATCGCGTCCAAGGAAACTAAAAGGATCATCAGCAGGAGG 599
Query 776 AGAAGGTTCGATTAAGAAGTCTTCAAAAGGAAAACCCGAGAATTCAGTTGATACAACCTG 835
|||||||||| |||| || || | ||||||||||||||||||||||||||||| ||
Sbjct 600 AGAAGGTTCGGTTAAAAAATCAGCGAAAGGAAAACCCGAGAATTCAGTTGATACT---TG 656
Query 836 TAACGATATTATCTGA 851
||||||||||||||||
Sbjct 657 TAACGATATTATCTGA 672
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31489529442
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5