BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G33470.1
Length=1121
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482291 jgi|Araly1|482291|fgenesh2_kg.4__1351__AT2G33470.1 1192 0.0
> Ahg482291 jgi|Araly1|482291|fgenesh2_kg.4__1351__AT2G33470.1
Length=925
Score = 1192 bits (645), Expect = 0.0
Identities = 874/973 (90%), Gaps = 61/973 (6%)
Strand=Plus/Plus
Query 112 AATTATTATTTTCTAAAACG-AGAGCCGTTT--AAAGAGAAAGAGAAATTTCTAACTCCA 168
|||||||||||||||||| | |||||||||| ||||| ||||||||| |||||||||||
Sbjct 1 AATTATTATTTTCTAAAA-GAAGAGCCGTTTAAAAAGAAAAAGAGAAAATTCTAACTCCA 59
Query 169 GAGAGCGAAGAACACAATCCCAGAGTAGCAGAATCTGATCCATCCCACCTTTT-TCAATT 227
|||||| | | | | | || || |||||||| |||||| ||||| ||||||
Sbjct 60 GAGAGC---G-A-A-AGT-----AGCAGAAGAATCTG----ATCCCA-CTTTTGTCAATT 103
Query 228 CTCAGGCAAA-GT--G--TTTGATCTCATAT-TCAGATAAGTCAAACTTGAAAAAATGGA 281
|||||||||| || | ||| |||| | | || | | || | | ||| ||||||||
Sbjct 104 CTCAGGCAAAGGTACGATTTTTTTCTCCT-TCTCCGCT-AG--AGATTTG--AAAATGGA 157
Query 282 AGGGACTGTGTTCACGCCTTGTTTGGAAGGAATGAAGCATGTCAAATCTGATCAAGGCGA 341
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 158 AGGGACTGTGTTCACGCCTTGTTTGGAAGGAATGAAGCATGTCAAGTCTGAACAAGGCGA 217
Query 342 GATGCTTACTAAGCCATTTTTAGAGCTTTGCAAGACCATCTTGCCTGTTATAGATAAATT 401
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 218 GATGCTTACTAAGCCGTTTTTAGAGCTCTGCAAGACCATCTTGCCTGTTATAGATAAATT 277
Query 402 TGGAGCTGCTATGACTCTCGTGAAATCTGACATTGGTGGCAACATAACGAGGTTGGAGAA 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 278 TGGAGCTGCTATGACTCTCGTGAAATCTGACATTGGTGGCAACATAACGAGGTTGGAGAA 337
Query 462 GAACTACTTATCTGATCCCGACAAGTTCAAGTACTTGTACACCTTTGTTCAAGTCGAAAT 521
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 338 GAACTACTTGTCTGATCCCGACAAGTTCAAGTACTTGTACACCTTTGTTCAAGTCGAAAT 397
Query 522 TGAGTCTAAGATAGCAAAAGGATCGTCTAGCTGTACAAACGGTCTTCTCTGGTTAACCAG 581
|||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 398 CGAGTCTAAGACAGCAAAAGGATCGTCTAGCTGTACCAACGGTCTTCTCTGGTTAACCAG 457
Query 582 AGCAATGGATTTCTTAGTGGAGCTGTTCCGAAACTTGGTAGCACATCAAGACTGGTCAAT 641
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 458 AGCAATGGATTTCTTGGTGGAGCTGTTCCGCAACTTGGTAGCACATCAAGACTGGTCAAT 517
Query 642 GCCACAAGCTTGTGCTGACTCATACCAAAAAACACTCAAGAAATGGCACGGATGGCTCGC 701
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 518 GCCACAAGCTTGTGCTGACTCATACCAAAAAACACTCAAGAAATGGCATGGATGGCTCGC 577
Query 702 CAGCTCTACCTTCTCTATGGCTTTAAAGCTAGCTCCGGACAGGAAGAAGTTCATGGATGT 761
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 578 CAGCTCTACCTTCTCTATGGCTTTAAAGCTAGCTCCAGACAGGAAGAAGTTCATGGATGT 637
Query 762 CATATCTGGTTCTGGTAACATCCAAGCCGACATGGAAAGGTTTTGTGCTGAGTTTGGTCC 821
|||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 638 CATATCTGGTTCTGGTGACATCCATGCCGACATGGAAAGGTTTTGCGCTGAGTTTGGTCC 697
Query 822 GTTTCTTCATGATAATCATAAGTTTCTGGCTAGCGTCGGTATGGATGACATGAAAGCTTC 881
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 698 GTTTCTTCAAGATAATCACAAGTTTCTGGCTAGCGTCGGTATGGATGACATGAAAGCTTC 757
Query 882 TTAAGTCATCATATGATTATCGCCGGTATCAAATCTTCTTTGCCGGAATCTTTGTCTGTT 941
|| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 758 TTGAGTCATCATATGATTATCGCCGGTATCGAATCTTCTTTGCCGGAATCTTTGTCAGTT 817
Query 942 TTAACTTTTCTCCTTCCAATTATAGAACCTCCAAAAAGAAACAGAATAATGTGTTGGTTT 1001
|||||||| || | |||| | | ||| |||||||| |||||
Sbjct 818 TTAACTTT---------AA--A-AGAAAC---A----GAA------TAATGTGTCGGTTT 852
Query 1002 CTATCTGAATGTTCACTTTATATTACA-A-GTT-ATAACATACGAATCAATCTTATCAAC 1058
||||||||||||||||||| |||| | | ||| |||||||||||||||||||||||| |
Sbjct 853 TTATCTGAATGTTCACTTTACATTATATAAGTTTATAACATACGAATCAATCTTATCAGC 912
Query 1059 TCTTCTTGTTAAT 1071
|||||||||||||
Sbjct 913 TCTTCTTGTTAAT 925
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41782717032
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5