BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G33470.1 Length=1121 Score E Sequences producing significant alignments: (Bits) Value Ahg482291 jgi|Araly1|482291|fgenesh2_kg.4__1351__AT2G33470.1 1192 0.0 > Ahg482291 jgi|Araly1|482291|fgenesh2_kg.4__1351__AT2G33470.1 Length=925 Score = 1192 bits (645), Expect = 0.0 Identities = 874/973 (90%), Gaps = 61/973 (6%) Strand=Plus/Plus Query 112 AATTATTATTTTCTAAAACG-AGAGCCGTTT--AAAGAGAAAGAGAAATTTCTAACTCCA 168 |||||||||||||||||| | |||||||||| ||||| ||||||||| ||||||||||| Sbjct 1 AATTATTATTTTCTAAAA-GAAGAGCCGTTTAAAAAGAAAAAGAGAAAATTCTAACTCCA 59 Query 169 GAGAGCGAAGAACACAATCCCAGAGTAGCAGAATCTGATCCATCCCACCTTTT-TCAATT 227 |||||| | | | | | || || |||||||| |||||| ||||| |||||| Sbjct 60 GAGAGC---G-A-A-AGT-----AGCAGAAGAATCTG----ATCCCA-CTTTTGTCAATT 103 Query 228 CTCAGGCAAA-GT--G--TTTGATCTCATAT-TCAGATAAGTCAAACTTGAAAAAATGGA 281 |||||||||| || | ||| |||| | | || | | || | | ||| |||||||| Sbjct 104 CTCAGGCAAAGGTACGATTTTTTTCTCCT-TCTCCGCT-AG--AGATTTG--AAAATGGA 157 Query 282 AGGGACTGTGTTCACGCCTTGTTTGGAAGGAATGAAGCATGTCAAATCTGATCAAGGCGA 341 ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 158 AGGGACTGTGTTCACGCCTTGTTTGGAAGGAATGAAGCATGTCAAGTCTGAACAAGGCGA 217 Query 342 GATGCTTACTAAGCCATTTTTAGAGCTTTGCAAGACCATCTTGCCTGTTATAGATAAATT 401 ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| Sbjct 218 GATGCTTACTAAGCCGTTTTTAGAGCTCTGCAAGACCATCTTGCCTGTTATAGATAAATT 277 Query 402 TGGAGCTGCTATGACTCTCGTGAAATCTGACATTGGTGGCAACATAACGAGGTTGGAGAA 461 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 278 TGGAGCTGCTATGACTCTCGTGAAATCTGACATTGGTGGCAACATAACGAGGTTGGAGAA 337 Query 462 GAACTACTTATCTGATCCCGACAAGTTCAAGTACTTGTACACCTTTGTTCAAGTCGAAAT 521 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 338 GAACTACTTGTCTGATCCCGACAAGTTCAAGTACTTGTACACCTTTGTTCAAGTCGAAAT 397 Query 522 TGAGTCTAAGATAGCAAAAGGATCGTCTAGCTGTACAAACGGTCTTCTCTGGTTAACCAG 581 |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 398 CGAGTCTAAGACAGCAAAAGGATCGTCTAGCTGTACCAACGGTCTTCTCTGGTTAACCAG 457 Query 582 AGCAATGGATTTCTTAGTGGAGCTGTTCCGAAACTTGGTAGCACATCAAGACTGGTCAAT 641 ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| Sbjct 458 AGCAATGGATTTCTTGGTGGAGCTGTTCCGCAACTTGGTAGCACATCAAGACTGGTCAAT 517 Query 642 GCCACAAGCTTGTGCTGACTCATACCAAAAAACACTCAAGAAATGGCACGGATGGCTCGC 701 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 518 GCCACAAGCTTGTGCTGACTCATACCAAAAAACACTCAAGAAATGGCATGGATGGCTCGC 577 Query 702 CAGCTCTACCTTCTCTATGGCTTTAAAGCTAGCTCCGGACAGGAAGAAGTTCATGGATGT 761 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 578 CAGCTCTACCTTCTCTATGGCTTTAAAGCTAGCTCCAGACAGGAAGAAGTTCATGGATGT 637 Query 762 CATATCTGGTTCTGGTAACATCCAAGCCGACATGGAAAGGTTTTGTGCTGAGTTTGGTCC 821 |||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||| Sbjct 638 CATATCTGGTTCTGGTGACATCCATGCCGACATGGAAAGGTTTTGCGCTGAGTTTGGTCC 697 Query 822 GTTTCTTCATGATAATCATAAGTTTCTGGCTAGCGTCGGTATGGATGACATGAAAGCTTC 881 ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 698 GTTTCTTCAAGATAATCACAAGTTTCTGGCTAGCGTCGGTATGGATGACATGAAAGCTTC 757 Query 882 TTAAGTCATCATATGATTATCGCCGGTATCAAATCTTCTTTGCCGGAATCTTTGTCTGTT 941 || ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| Sbjct 758 TTGAGTCATCATATGATTATCGCCGGTATCGAATCTTCTTTGCCGGAATCTTTGTCAGTT 817 Query 942 TTAACTTTTCTCCTTCCAATTATAGAACCTCCAAAAAGAAACAGAATAATGTGTTGGTTT 1001 |||||||| || | |||| | | ||| |||||||| ||||| Sbjct 818 TTAACTTT---------AA--A-AGAAAC---A----GAA------TAATGTGTCGGTTT 852 Query 1002 CTATCTGAATGTTCACTTTATATTACA-A-GTT-ATAACATACGAATCAATCTTATCAAC 1058 ||||||||||||||||||| |||| | | ||| |||||||||||||||||||||||| | Sbjct 853 TTATCTGAATGTTCACTTTACATTATATAAGTTTATAACATACGAATCAATCTTATCAGC 912 Query 1059 TCTTCTTGTTAAT 1071 ||||||||||||| Sbjct 913 TCTTCTTGTTAAT 925 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41782717032 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5