BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G33480.1
Length=1051
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482294 jgi|Araly1|482294|fgenesh2_kg.4__1354__AT2G33480.1 1059 0.0
> Ahg482294 jgi|Araly1|482294|fgenesh2_kg.4__1354__AT2G33480.1
Length=984
Score = 1059 bits (573), Expect = 0.0
Identities = 918/1066 (86%), Gaps = 97/1066 (9%)
Strand=Plus/Plus
Query 1 TAAAATAAGCCAAACTTTACCTCTCCATTTTCAATAATCTCTCATCTTCTTTCGTCTCTC 60
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TAAAATAAACCAAACTTTCCCTCTCCATTTTCAATAATCTCTCATCTTCTTTCGTCTCTC 60
Query 61 TTTCTACGGTTCAAACATTAAAAAGATAGATGGAGAAGAGGAGCTCTATTAAAAACAGAG 120
|||||||||||||||| |||||||||| | |||| |||||| |||||||
Sbjct 61 TTTCTACGGTTCAAAC------------GATGGAGAAGCGAAGCTTTATTAAGAACAGAG 108
Query 121 GAGTACTTAGATTACCACCAGGGTTCCGATTTCACCCGACCGATGAAGAGCTAGTGGTTC 180
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 109 GAGTACTTAGATTACCACCTGGGTTCCGATTCCACCCGACCGATGAAGAGCTAGTGGTTC 168
Query 181 AATATTTACGTCGAAAAGTAACCGGTTTACCCTTACCAGCTTCTGTAATACCGGAAACCG 240
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 169 AATATTTACGTCGAAAAGTAACCGGTTTACCCTTACCAGCTTCTGTTATACCGGAAACCG 228
Query 241 ATGTTTGTAAATCCGATCCATGGGATTTACCAGGTGATTGTGAATCAGAGATGTAttttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 229 ATGTTTGTAAATCCGATCCATGGGATTTACCAGGTGATTGTGAATCAGAGAGGTATTTTT 288
Query 301 ttAGCACGAGGGAAGCTAAATACCCGAACGGAAACCGGTCGAACCGGTCTACCGGTTCGG 360
| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 289 TCAGCACAAGGGAAGCTAAATACCCGAACGGAAACCGGTCGAACCGGTCTACTGGTTCAG 348
Query 361 GTTATTGGAAAGCGACTGGTCTCGATAAGCAGATCGGTAAGAAGAAGCTTGTCGTGGGGA 420
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 349 GTTATTGGAAAGCGACTGGTATCGATAAGCAAATCGGTAAGAAGAAGCTTGTCGTGGGGA 408
Query 421 TGAAGAAAACTCTTGTTTTCTACAAAGGTAAACCACCAAACGGAACAAGAACTAACTGGG 480
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 409 TGAAGAAAACTCTGGTTTTCTACAAAGGTAAACCACCAAACGGGACAAGAACTAACTGGG 468
Query 481 TTCTTCATGAATATCGTCTTGTTGATTCACAACAAGATTCATTATATGGACAGAACATGA 540
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 469 TTCTTCATGAATATCGTCTTGTTGATTCACAACAAGAATCATCATATGGACAGAACATGA 528
Query 541 ATTGGGTTTTGTGTAGAGTGTTCTTgaagaagagaagcaatagtaatagtaagaggaaag 600
|||||||| ||||| |||||||||||||||||||||||||||| || | | | ||
Sbjct 529 ATTGGGTTCTGTGTCGAGTGTTCTTGAAGAAGAGAAGCAATAG---TACT-A-A--TAAT 581
Query 601 aagatgagaaagaagaggtggagaatgagaaagagacagagacagagagagaacgtgagg 660
|||| | ||||||||| | ||||| || |||||| |||| | |||| || ||
Sbjct 582 AAGA-G-GAAAGAAGA--T-GAGAA--AG-AAGAGATTGAGA-A-TGAGA-AA---GA-T 626
Query 661 aggagaacaagaagagTACTTGTCCCATATTTTATGACTTTATGagaaaagacacgaaga 720
| || | | |||| |||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 627 A-AAG-A-GA-AAGA-TACTTGTCCCATTTTTTATGACTTTATGAGAAAAGACATGAAGA 681
Query 721 aaaagagaag--g-agaagaagaTGCTGTGATTTGAATTTGACTCCTGCTAC-T-T--GT 773
|||||||||| | |||||||||||||||||||||||||||||||||||||| | | ||
Sbjct 682 AAAAGAGAAGAAGAAGAAGAAGATGCTGTGATTTGAATTTGACTCCTGCTACGTCTACGT 741
Query 774 -T-GTTGTTGCT-CTTCTTCG--A-CTTCTTCGTCGTCTGTTTGCTCAAGTGCTTTAACT 827
| |||||| || ||||||| | | |||||||||||||||||||||||||||||||||
Sbjct 742 GTTGTTGTT-CTTCTTCTTCATCAGCGTCTTCGTCGTCTGTTTGCTCAAGTGCTTTAACT 800
Query 828 CACACATCTTCTAATGATAATCGTCAAGAAATCAGTTATCGGGAAAATAAGTTTTGTTTG 887
||||||||||||||| |||||| | ||| | | |||||||||||||||||
Sbjct 801 CACACATCTTCTAATAATAATC---A-----TCA-T----G--AAAATAAGTTTTGTTTG 845
Query 888 TTTCTATAGATTAACAAACTTGGGAACAACTTCTATTAACTTTAATAAATTAGATTATGA 947
||||| |||||| || ||| || || ||| || ||| ||| ||||||
Sbjct 846 TTTCTCTAGATT-------TT---AAC---TT-TAATAAATT-AAT---TTA--TTATGA 885
Query 948 TTGTTTCCAAAGTTAATTATGCAATCCA-GGA-GTCTTTCTTGGTTTTGGTAATTAATAG 1005
|| ||||||| | |||| || | || || ||||||||| ||||||||||||||
Sbjct 886 TTA---CCAAAGTGA-TTATTTTCTC-ATGGTTGTTTTTCTTGGTGTTGGTAATTAATAG 940
Query 1006 CCATATTTTATAGCTTATCTAATTGTATCAAATATTGAAAACTGGT 1051
||| ||||| |||| ||||||||| ||||||||||||||||||||
Sbjct 941 CCACATTTTTTAGCGTATCTAATT--ATCAAATATTGAAAACTGGT 984
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39114112842
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5