BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G33500.1
Length=1589
Score E
Sequences producing significant alignments: (Bits) Value
Ahg321080 jgi|Araly1|321080|fgenesh1_pm.C_scaffold_4001137 1644 0.0
Ahg473005 jgi|Araly1|473005|fgenesh2_kg.1__2959__AT1G28050.1 335 7e-91
> Ahg321080 jgi|Araly1|321080|fgenesh1_pm.C_scaffold_4001137
Length=1203
Score = 1644 bits (890), Expect = 0.0
Identities = 1116/1221 (91%), Gaps = 32/1221 (3%)
Strand=Plus/Plus
Query 209 ATGGGTACTTCTACTACAGAGAGTGTGGTGGCGTGTGAATTTTGCGGCGAGAGAACGGCG 268
|||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGGGTGGTTCTACTAGGGAGAGTGTGGTGGCGTGCGAATTTTGCGGCGAGAGAACGGCG 60
Query 269 GTTCTGTTTTGTAGAGCCGATACGGCGAAGCTTTGTTTGCCTTGTGACCAGCACGTGCAC 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GTTCTGTTTTGTAGAGCCGATACGGCGAAGCTTTGTTTGCCTTGTGACCAGCACGTGCAC 120
Query 329 TCGGCGAACCTTCTCTCGAGGAAGCATGTTCGTTCTCAGATCTGTGATAACTGTAGCAAA 388
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCTGCGAACCTTCTTTCGAGGAAGCATGTTCGTTCTCAGATCTGTGATAACTGTAGCAAA 180
Query 389 GAGCCGGTGTCCGTACGTTGCTTCACAGATAATCTCGTATTGTGTCAGGAGTGTGATTGG 448
||||||||| | ||||| |||||||| ||||||||||| |||||||||||||||||||||
Sbjct 181 GAGCCGGTGACTGTACGGTGCTTCACCGATAATCTCGTCTTGTGTCAGGAGTGTGATTGG 240
Query 449 GATGTTCACGGAAGCTGTTCCTCCTCCGCGACGCATGAACGCTCCGCCGTGGAAGGGTTT 508
|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 241 GATGTTCACGGAAGCTGTTCCTCCGCCGCGACGCATGAACGCTCCGCCGTGGAGGGGTTT 300
Query 509 TCAGGTTGTCCTTCGGTTTTGGAGCTTGCTGCTGTGTGGGGAATCGATTTAAAGGGTAAG 568
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 301 TCTGGTTGTCCTTCGGTTTTGGAGCTTGCTGCTGTGTGGGGAATCGATTTGGAGGGGAAG 360
Query 569 AAGAAAGAAGATGACGAAGACGAATTGACTAAGAATTTTGGGATGGGGTTGGATTCGTGG 628
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 361 AAGAAAGAAGATGAAGAAGACGAATTGACTAAGAATTTTGGGATGGCGTTGGATTCGTGG 420
Query 629 GGTTCTGGATCTAACATCGTTCAAGAACTGATTGTTCCTTATGATGTGTCT-TGCAAAAA 687
|||||||||||||||| ||||||||| ||||| |||||||||||||| || | ||||||
Sbjct 421 GGTTCTGGATCTAACAACGTTCAAGATCTGATCGTTCCTTATGATGTTTCGAT-CAAAAA 479
Query 688 GCAAAGCTTTAGCTTTGGGAGGTCTAAGCAGGTAGTGTTTGAACAGCTTGAGTTACTGAA 747
||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 480 GCAAAGCTTTAGCTTCGGGAGGTCTAAGCAGGTAGTGTTTAAACAGCTTGAGTTGCTGAA 539
Query 748 GAGAGGCTTCGTTGA-----A-GGCGAAGGAGAGATTATGGTTCCGGAGGGAATCAATGG 801
|||||||||||||| | |||| |||||||||||||||||||||||||||||||||
Sbjct 540 GAGAGGCTTCGTTGGCGGTGACGGCGGAGGAGAGATTATGGTTCCGGAGGGAATCAATGG 599
Query 802 CGGAGGAAGCATTTCTCAGCCATCTCCGACGACGTCGTTTACTTCTTTGCTTATGTCTCA 861
|||||||||||||| |||||||||||| | | || | | | | ||| ||
Sbjct 600 CGGAGGAAGCATTTGTCAGCCATCTCCTATG---TC----AG--CA--G---A-GTCCCA 644
Query 862 AAGTCTTTGTGGTAATGGTATGCAATGGAATGCTACTAATCATAGCACTGGC-CAGAACA 920
||||| ||||||||||| |||||||||||||||||| |||||||||| | | | | ||
Sbjct 645 AAGTCATTGTGGTAATGCTATGCAATGGAATGCTACCAATCATAGCAGTA-CTCT-ACCA 702
Query 921 CTCA--G-A-TATGGGATTTTAACTTGGGACAGTCGAGGAACCCTGATGAACCTAGTCCA 976
||| | | ||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 703 ATCATAGCAATATGGGATTTTAACTTGGGACAGTCCAGGAACCCTGAGGAACCTAGTCCA 762
Query 977 GTCGAAACTAAAGGCTCTACTTTCACATTCAACAACGTTACTCATCTCAAGAACGATACC 1036
||||||||||||||||||||||||||||||||| | || |||||| ||||||||||||||
Sbjct 763 GTCGAAACTAAAGGCTCTACTTTCACATTCAACGAGGTCACTCATGTCAAGAACGATACC 822
Query 1037 CGAACCACCAATATGAATGCTTTCAAAGAGAGTTACCAGCAGGAGGATTCCGTCCACTCA 1096
||| |||||||| |||| ||||||||||||| |||||||||||| |||||| ||| ||||
Sbjct 823 CGAGCCACCAATGTGAAAGCTTTCAAAGAGACTTACCAGCAGGATGATTCCATCCGCTCA 882
Query 1097 ACTTCTACCAAGGGACAGGAAACATCTAAGAGCAACAATATTC-CTGCTGCCATTCACTC 1155
||||| |||||||||||||||| |||||||||||||||||||| | ||||||||||| ||
Sbjct 883 ACTTCCACCAAGGGACAGGAAATATCTAAGAGCAACAATATTCTC-GCTGCCATTCATTC 941
Query 1156 GCATAAAAGTTCTAACGACTCCTGTGGCTTGCATTGCACGGAACATATTGCTATTACTAG 1215
|||||||||||||||||||||| ||| ||||||||||| ||||||||||||||| |||||
Sbjct 942 GCATAAAAGTTCTAACGACTCCAGTGACTTGCATTGCATGGAACATATTGCTATGACTAG 1001
Query 1216 TAATAGAGCCACAAGATTGGTGGCGGTAACGAATGCTGATCTAGAGCAGATGGCACAGAA 1275
||||||||| |||||||||||||||| ||| |||||||||||||| | | ||||||||||
Sbjct 1002 TAATAGAGCTACAAGATTGGTGGCGGCAACAAATGCTGATCTAGAACGGTTGGCACAGAA 1061
Query 1276 CAGAGATAATGCTATGCAGCGGTACAAGGAAAAGAAGAAAACGCGGAGATATGATAAGAC 1335
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1062 CAGAGACAATGCTATGCAGCGGTACAAGGAAAAGAAGAAGACGCGGAGATATGATAAGAC 1121
Query 1336 CATAAGATATGAAACGAGGAAGGCGAGAGCCGAGACCAGGTTGCGTGTTAAGGGCAGATT 1395
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1122 CATAAGATATGAAACGAGGAAGGCGAGAGCCGAGACCAGGTTGCGTGTAAAGGGCAGATT 1181
Query 1396 TGTGAAAGCTACAGATCCTTA 1416
|||||||||||||||||||||
Sbjct 1182 TGTGAAAGCTACAGATCCTTA 1202
> Ahg473005 jgi|Araly1|473005|fgenesh2_kg.1__2959__AT1G28050.1
Length=1656
Score = 335 bits (181), Expect = 7e-91
Identities = 277/323 (86%), Gaps = 8/323 (2%)
Strand=Plus/Plus
Query 240 CGTGTGAATTT-TGCGGCGAGAGAACGGCGGTTCTGTTTTGTAGAGCCGATACGGCGAAG 298
|||| | |||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 156 CGTGCG-ATTTCTGCGGCGAGAGAACGGCGGTTTTGTTTTGTAGAGCCGATACGGCGAAG 214
Query 299 CTTTGTTTGCCTTGTGACCAGCACGTGCACTCGGCGAACCTTC-TCTCGAGGAAGCATGT 357
|| |||||||||||||| |||||||||||| ||||||| | || | ||||||||||| ||
Sbjct 215 CTGTGTTTGCCTTGTGATCAGCACGTGCACACGGCGAATC-TCTTGTCGAGGAAGCACGT 273
Query 358 TCGTTCTCAGATCTGTGATAACTGTAGCAAAGAGCCGGTGTCCGTACGTTGCTTCACAGA 417
|| ||||||||||| ||||| ||| |||| ||||| || || || || |||||||| ||
Sbjct 274 GCGATCTCAGATCTGCGATAATTGTGGCAACGAGCCAGTCTCTGTTCGGTGCTTCACCGA 333
Query 418 TAATCTCGTATTGTGTCAGGAGTGTGATTGGGATGTTCACGGAAGCTGTTCC-TCCTCCG 476
||||||| | ||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 334 TAATCTCATTTTGTGTCAGGAGTGTGATTGGGATGTTCACGGAAGCTGTTCAGTT-TCCG 392
Query 477 C-GACGCATGAACGCTCCGCCGTGGAAGGGTTTTCAGGTTGTCCTTCGGTTTTGGAGCTT 535
| | |||| || |||||||| ||||| ||||| |||||||| |||| |||||||||
Sbjct 393 ATG-CTCATGTTCGATCCGCCGTCGAAGGTTTTTCCGGTTGTCCATCGGCGTTGGAGCTT 451
Query 536 GCTGCTGTGTGGGGAATCGATTT 558
|||||| |||||||| | |||||
Sbjct 452 GCTGCTTTGTGGGGACTTGATTT 474
Score = 71.3 bits (38), Expect = 2e-11
Identities = 62/73 (85%), Gaps = 3/73 (4%)
Strand=Plus/Plus
Query 882 TGCAATGGAATG---CTACTAATCATAGCACTGGCCAGAACACTCAGATATGGGATTTTA 938
|||| ||||||| ||||||||| ||| |||||||| ||||||||||||||||||
Sbjct 861 TGCAGTGGAATGCTACTACTAATCCTAGTGGTGGCCAGAGTTCTCAGATATGGGATTTTA 920
Query 939 ACTTGGGACAGTC 951
|||||||||||||
Sbjct 921 ACTTGGGACAGTC 933
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59535052935
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5