BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G33510.2 Length=834 Score E Sequences producing significant alignments: (Bits) Value Ahg933938 jgi|Araly1|933938|scaffold_401926.1 575 2e-163 > Ahg933938 jgi|Araly1|933938|scaffold_401926.1 Length=603 Score = 575 bits (311), Expect = 2e-163 Identities = 365/388 (94%), Gaps = 15/388 (4%) Strand=Plus/Plus Query 304 GGAGAGATTTACTACATAAACTGGAAAAACGGAATGAGAGTGAAAGAGGATCCAAGGAAA 363 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 231 GGAGATATTTACTACATAAACTGGAAAAACGGAATGAGAGTGAAAGAGGATCCAAGGAAA 290 Query 364 GTGATGAATGCAGATCCTGACAGTGGAGACTCATATGGAACCGTGTGTTCAGAAGAAGAT 423 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 291 GTGATGAATGCGGATCCTGACAGTGGAGACTCATATGGAACCGTGTGTTCAGAAGAAGAT 350 Query 424 AGCTCATATTACGACAGCgaagagtcttcatcagagtcatctccatcatcaagagagaat 483 |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| Sbjct 351 AGCTCATATTACGACAGCGAAGAGTCTTCAGCAGAGTCATCCCCATCATCAAGAGAGAAT 410 Query 484 cataaagaagaagaagaagaagaagaagaggaggaagaagaagaagaagaTGTGCTAGTG 543 |||||||| | ||||| | ||||| | | | | ||||||||||| | | | |||||| Sbjct 411 CATAAAGA-G--GAAGA-G--GAAGA-G-G-A--A-GAAGAAGAAGATG-T-T-CTAGTG 455 Query 544 GTTGCTGGTTGCAAAGCTTGTTTCATGTACTTCATGGTTCCTAAGCTTGTTGAGGACTGT 603 |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 456 GTTGCTGGATGCAAAGCTTGTTTCATGTACTTCATGGTTCCTAAGCTTGTCGAGGACTGT 515 Query 604 CCTAAATGTGCAGCACAGCTTCTTCACTTTGATCGACCTCATTCTGCATCTTCTTGAAAC 663 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 516 CCCAAATGTGCAGCACAGCTTCTTCACTTTGATCGACCTCATTCTGCATCTTCTTGAAAC 575 Query 664 CCTTGTCTTTGTTTGGATTTTCCCTTTA 691 |||||||||||||||||||||||||||| Sbjct 576 CCTTGTCTTTGTTTGGATTTTCCCTTTA 603 Score = 368 bits (199), Expect = 3e-101 Identities = 222/232 (96%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 25 GAGGCAAGaaaaaaaGAGAAGATGAAAGCACCCAACATGGAGACGATAACGGAGTCTCTA 84 |||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||| Sbjct 1 GAGGGAAGAAAAAAAGA-AAGATGAAAGCACCCAACATGGAGACGATAACAGAGTCTCTG 59 Query 85 GAGAAATCGATG-ATGAATTGTTCTCTGAATGATCGGAGAAGAAGGGTCGTCGGAGATGG 143 |||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 60 GAGAAATCGATGCA-GAATTTTTCTCTGAATGATCGGAGAAGAAGGGTCGTCGGAGATGG 118 Query 144 GTTTGGGAGATCGTCGAGCAACGAACACATGACTCCGATCTCAGATAGAACATTGGAGCT 203 ||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||| Sbjct 119 GTTTGGGAGATCGTCGAGCAACG-A-ACAT-ACTCCGATCTCAGATAGAACATTGGAGCT 175 Query 204 CAATTCTCACTTATCTCTTCCTTGTCACTGGGAACAGTGTCTTGATCTTAAG 255 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 176 CAATTCTCACTTATCTCTTCCTTGTCACTGGGAACAGTGTCTTGATCTTAAG 227 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30841439853 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5