BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G33510.2

Length=834
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg933938 jgi|Araly1|933938|scaffold_401926.1                        575    2e-163


> Ahg933938 jgi|Araly1|933938|scaffold_401926.1
Length=603

 Score =  575 bits (311),  Expect = 2e-163
 Identities = 365/388 (94%), Gaps = 15/388 (4%)
 Strand=Plus/Plus

Query  304  GGAGAGATTTACTACATAAACTGGAAAAACGGAATGAGAGTGAAAGAGGATCCAAGGAAA  363
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  231  GGAGATATTTACTACATAAACTGGAAAAACGGAATGAGAGTGAAAGAGGATCCAAGGAAA  290

Query  364  GTGATGAATGCAGATCCTGACAGTGGAGACTCATATGGAACCGTGTGTTCAGAAGAAGAT  423
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  291  GTGATGAATGCGGATCCTGACAGTGGAGACTCATATGGAACCGTGTGTTCAGAAGAAGAT  350

Query  424  AGCTCATATTACGACAGCgaagagtcttcatcagagtcatctccatcatcaagagagaat  483
            |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct  351  AGCTCATATTACGACAGCGAAGAGTCTTCAGCAGAGTCATCCCCATCATCAAGAGAGAAT  410

Query  484  cataaagaagaagaagaagaagaagaagaggaggaagaagaagaagaagaTGTGCTAGTG  543
            |||||||| |  ||||| |  ||||| | | |  | ||||||||||| | | | ||||||
Sbjct  411  CATAAAGA-G--GAAGA-G--GAAGA-G-G-A--A-GAAGAAGAAGATG-T-T-CTAGTG  455

Query  544  GTTGCTGGTTGCAAAGCTTGTTTCATGTACTTCATGGTTCCTAAGCTTGTTGAGGACTGT  603
            |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  456  GTTGCTGGATGCAAAGCTTGTTTCATGTACTTCATGGTTCCTAAGCTTGTCGAGGACTGT  515

Query  604  CCTAAATGTGCAGCACAGCTTCTTCACTTTGATCGACCTCATTCTGCATCTTCTTGAAAC  663
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  516  CCCAAATGTGCAGCACAGCTTCTTCACTTTGATCGACCTCATTCTGCATCTTCTTGAAAC  575

Query  664  CCTTGTCTTTGTTTGGATTTTCCCTTTA  691
            ||||||||||||||||||||||||||||
Sbjct  576  CCTTGTCTTTGTTTGGATTTTCCCTTTA  603


 Score =  368 bits (199),  Expect = 3e-101
 Identities = 222/232 (96%), Gaps = 6/232 (3%)
 Strand=Plus/Plus

Query  25   GAGGCAAGaaaaaaaGAGAAGATGAAAGCACCCAACATGGAGACGATAACGGAGTCTCTA  84
            |||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||| 
Sbjct  1    GAGGGAAGAAAAAAAGA-AAGATGAAAGCACCCAACATGGAGACGATAACAGAGTCTCTG  59

Query  85   GAGAAATCGATG-ATGAATTGTTCTCTGAATGATCGGAGAAGAAGGGTCGTCGGAGATGG  143
            |||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  60   GAGAAATCGATGCA-GAATTTTTCTCTGAATGATCGGAGAAGAAGGGTCGTCGGAGATGG  118

Query  144  GTTTGGGAGATCGTCGAGCAACGAACACATGACTCCGATCTCAGATAGAACATTGGAGCT  203
            ||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||
Sbjct  119  GTTTGGGAGATCGTCGAGCAACG-A-ACAT-ACTCCGATCTCAGATAGAACATTGGAGCT  175

Query  204  CAATTCTCACTTATCTCTTCCTTGTCACTGGGAACAGTGTCTTGATCTTAAG  255
            ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  176  CAATTCTCACTTATCTCTTCCTTGTCACTGGGAACAGTGTCTTGATCTTAAG  227



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30841439853


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5