BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G33520.1
Length=610
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933939 jgi|Araly1|933939|scaffold_401927.1 335 2e-91
> Ahg933939 jgi|Araly1|933939|scaffold_401927.1
Length=278
Score = 335 bits (181), Expect = 2e-91
Identities = 231/255 (91%), Gaps = 4/255 (2%)
Strand=Plus/Plus
Query 104 TTGCAAATCTAAA-GATTCACAATGGCATCTTACCATGTTTCTCATGATTCATATCAATC 162
||||||||||||| | |||||||||||||||||||||| ||||||||| || |||||| |
Sbjct 2 TTGCAAATCTAAAGGGTTCACAATGGCATCTTACCATGCTTCTCATGAGTCTTATCAACC 61
Query 163 ACCAGGTCCTTCACCATTGTACCAACCGATAATAGAGGCTCCACCGCCACCGTATCCACC 222
||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 62 ACCAGGTCCGTCGCCATTGTACCAACCGATGATAGAGGCTCCACCGCCACCGTATCCACC 121
Query 223 AACCCGAACGAGGTATCAAGATTACTACGGTGGCTACGGTCAGCCGCATCCACCACCTCT 282
||| |||| || |||||||| ||||||||||||||||||||||| ||||| ||||| ||
Sbjct 122 AACGAGAACAAGATATCAAGACTACTACGGTGGCTACGGTCAGCCTCATCCCCCACCGCT 181
Query 283 ACGTCCATATAGATCAGATCATGAATACTATGGAGACGGAGAATATGTTGGTTGCTTTCC 342
|||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||
Sbjct 182 GCGTCCATATAGATCAGAT---GAATACTATAGAGAAGGAGAATATGTTGGTTGCTTTCC 238
Query 343 GTTTCTCAGAAGCTG 357
||||||||||||||
Sbjct 239 TTTTCTCAGAAGCTG 253
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22301906445
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5