BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G33530.1
Length=1642
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482299 jgi|Araly1|482299|fgenesh2_kg.4__1359__AT2G33530.1 2338 0.0
Ahg473017 jgi|Araly1|473017|fgenesh2_kg.1__2971__AT1G28110.2 1393 0.0
Ahg489176 jgi|Araly1|489176|fgenesh2_kg.6__2310__AT5G23210.1 69.4 8e-11
> Ahg482299 jgi|Araly1|482299|fgenesh2_kg.4__1359__AT2G33530.1
Length=1491
Score = 2338 bits (1266), Expect = 0.0
Identities = 1420/1495 (95%), Gaps = 7/1495 (0%)
Strand=Plus/Plus
Query 22 ACAATGCCTCGCCTACAATGCCTAACAATGGCGACTTCACTAATTCTGCTGCTTCAAGCT 81
|||||| |||||||||| |||||||||||||||||| |||||| | | ||||||||||||
Sbjct 2 ACAATGTCTCGCCTACATTGCCTAACAATGGCGACTGCACTAA-T-T-CTGCTTCAAGCT 58
Query 82 CTGAGTTTAGTGAGCT-CAACTATTCTGTCCCGGGCCGATCGGATCACCCGTTTACCCGG 140
||||||||||| |||| | | ||| || ||||||||||||||||||||||||||||||||
Sbjct 59 CTGAGTTTAGTAAGCTGC-AGTATCCTATCCCGGGCCGATCGGATCACCCGTTTACCCGG 117
Query 141 TCAACCCCGAGTCGGGTTTCAGCAGTACTCAGGTTATGTCACTATTGACGAGAAGAAACA 200
||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 118 TCAACCCCGGGTCGGATTTCAGCAGTACTCAGGTTATGTCACTATTGACGATAAGAAACA 177
Query 201 GAGAGCTCTGTTTTACTACTTGGCTGAAGCAGAAACCAAACCCATCTCTAAACCTCTCGT 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 GAGAGCTCTGTTTTACTACTTGGCTGAAGCAGAAACCAAACCCATCTCTAAACCTCTCGT 237
Query 261 TCTCTGGCTCAATGGAGGACCTGGATGTTCATCATTAGGTGTTGGTGCATTCTCTGAGAA 320
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 238 CCTCTGGCTTAATGGAGGACCGGGATGTTCATCATTAGGTGTTGGTGCATTCTCTGAGAA 297
Query 321 TGGACCTTTTAGACCAAAGGGATCAATCTTGGTGAGAAATCAACACAGCTGGAATCAAGA 380
|||||||||||||||||| |||||| |||||||||| |||| ||||||||||||||||||
Sbjct 298 TGGACCTTTTAGACCAAAAGGATCAGTCTTGGTGAGGAATCTACACAGCTGGAATCAAGA 357
Query 381 GGCTAATATGTTGTATCTGGAGACACCTGTTGGAGTTGGATTTTCTTATGCAAATGAGAG 440
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 358 GGCTAATATGTTGTATCTGGAGACACCTGTTGGAGTTGGATTTTCTTATGCAACTGAGAG 417
Query 441 CTCCTCTTATGAGGGTGTGAATGATAAGATCACTGCAAAAGACAATCTTGTGTTCTTGCA 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 CTCCTCTTATGAGGGTGTGAATGATAAGATCACTGCAAAAGACAATCTTGTGTTCTTGCA 477
Query 501 AAAATGGTTCCTCAAATTCCCTCAATATCTCAACAGAAGTCTCTTCATCACTGGTGAAAG 560
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 478 AAAATGGTTCCTCAAATTCCCTCAATATCTCAATAGAAGTCTTTTCATCACTGGTGAAAG 537
Query 561 CTATGCTGGCCATTATGTTCCTCAGTTGGCTCAGCTTATGATTCAGTACAACAAGAAGCA 620
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 538 CTACGCTGGCCATTATGTTCCTCAGTTAGCTCAGCTTATGATTCAGTACAACAAGAAGCA 597
Query 621 CAATTTGTTTAATCTCAAAGGCATTGCTATTGGCAATCCGGTTATGGAGTTTGCAACGGA 680
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 598 CAATTTGTTTAATCTCAAAGGCATTGCTATTGGCAATCCGGTTATGGAGTTTGCGACGGA 657
Query 681 TTTCAATTCACGAGCAGAGTATTTCTGGTCTCACGGGTTGATATCGGATCCAACTTACAA 740
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 658 TTTCAATTCACGAGCGGAGTATTTCTGGTCTCACGGGTTGATATCGGATCCAACATACAA 717
Query 741 ATTGTTCACATCTTCTTGTAATTACTCGAGATTTTTGAGTGAGTACCATAGAGGATCAGT 800
| |||||||||||| ||||||||||||| ||| | ||||||||||| |||||||||||||
Sbjct 718 AATGTTCACATCTTATTGTAATTACTCGCGATATGTGAGTGAGTACTATAGAGGATCAGT 777
Query 801 GTCGAGTATGTGCACTAAAGTGCTAAGTCAAGTTGGCATCGAAACAAGTAGATTCATAGA 860
||| |||||||||||||||||| | ||||||||| |||||||||||||||||||| ||||
Sbjct 778 GTCAAGTATGTGCACTAAAGTGATGAGTCAAGTTAGCATCGAAACAAGTAGATTCGTAGA 837
Query 861 CAAATATGACGTTACTCTTGACGTCTGCATTCCCTCTGTGCTATCTCAATCCAAAGTAGT 920
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 838 CAAATATGACGTTACTCTTGACGTGTGCATTCCCTCTGTGCTATCTCAATCCAAAGTAGT 897
Query 921 TAGCCCTCAACCTCAACAAGTGGGAGAGACGGTGGATGTGTGTCTAGAAGATGAGACGGT 980
|| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 898 TAACCCTCAACCTCAACAAGTGGGAGAGACGGTGGATGTTTGTGTAGAAGATGAGACGGT 957
Query 981 GAACTATCTTAACCGGAGAGATGTGCAAAAAGCTCTCCACGCTCGGCTTGTCGGAACTCG 1040
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 958 GAACTATCTTAACCGGAGAGATGTGCAAAAAGCTCTCCATGCTCGGCTTGTCGGAACTCG 1017
Query 1041 CAAATGGACTGTTTGCAGCGATGTGCTGGATTACGAAGTACTTGATGTGGAAGTACCAAC 1100
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 CAAATGGGCTGTTTGCAGCAATGTGCTGGATTACGAAGTACTTGATGTGGAAGTACCAAC 1077
Query 1101 GATAAATATCGTAGGAAGTCTTGTTAAAGCTGGTGTTCCAGTTTTTGTGTACAGTGGAGA 1160
||| ||||| ||||||||||| ||||||||||| ||||| ||| |||||||||| |||||
Sbjct 1078 GATTAATATTGTAGGAAGTCTGGTTAAAGCTGGAGTTCCGGTTCTTGTGTACAGCGGAGA 1137
Query 1161 TCAAGACTCTGTGATTCCGTTAACCGGAAGTAGAACATTAGTGAAGCGACTGGCTGAAGA 1220
|||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1138 TCAAGATTCTGTGATTCCGTTGACTGGAAGTAGAACATTAGTGAAGCGACTGGCTGAAGA 1197
Query 1221 GTTGGGACTAAGAACAACCGTGCCTTATCGAGTTTGGTTCGCAGGACAACAGGTTGGTGG 1280
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1198 GTTGGGACTGAGAACAACCGTGCCTTATCGAGTTTGGTTCGCGGGACAACAGGTTGGTGG 1257
Query 1281 GTGGACTCAAGTTTATGGGAACACATTGGCGTTTGCCACTGTGAGAGGAGCAGCCCACGA 1340
||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1258 GTGGACTCAGGTTTATGGGAATACATTGGCGTTTGCAACTGTGAGAGGAGCAGCCCACGA 1317
Query 1341 GGTACCATTCTCGCAGCCCGCGAGAGCGCTTGTGTTGTTTAAAGCATTCTTGGGTGGTCG 1400
||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1318 AGTACCATTCTCGCAGCCCGCGAGAGCGCTCGTGTTGTTTAAAGCATTCTTGGGCGGTCG 1377
Query 1401 TCCTCTCCCTGAAGAATTCTAATGCGTTT-ACCATTTTCTGAGCTTGTAAGTAAACATTG 1459
|||||||||||||||||||| ||| ||| |||||||||| |||||||||||||||||||
Sbjct 1378 TCCTCTCCCTGAAGAATTCTGATGT-TTTCACCATTTTCTAAGCTTGTAAGTAAACATTG 1436
Query 1460 GTGAACAATGTCCCAAAATGGCTATATTTGATTCACGGCGAGAAAAGGAAATACT 1514
|||||||||||||||||||||||||||||||| || |||||||||| |||||||
Sbjct 1437 GTGAACAATGTCCCAAAATGGCTATATTTGATCCAGGGCGAGAAAATAAAATACT 1491
> Ahg473017 jgi|Araly1|473017|fgenesh2_kg.1__2971__AT1G28110.2
Length=1795
Score = 1393 bits (754), Expect = 0.0
Identities = 1163/1358 (86%), Gaps = 37/1358 (3%)
Strand=Plus/Plus
Query 104 TTCTGTCCCGGGCCGATCGGATCACCCGTTTACCCGGTCAACCCCGAGTCGGGTTTCAGC 163
||||||||| |||||||| ||||||||||||||||||||||||| ||||| || ||||
Sbjct 133 TTCTGTCCCACTCCGATCGGGTCACCCGTTTACCCGGTCAACCCCGGGTCGGATTCCAGC 192
Query 164 AGTACTCAGGTTATGTCACTATTGACGAGAAGAAACAGAGAGCTCTGTTTTACTACTTGG 223
| ||||| |||||||||||| | ||||| |||||||||||||| |||||||||||||| |
Sbjct 193 AATACTCCGGTTATGTCACTGTCGACGACAAGAAACAGAGAGCCCTGTTTTACTACTTCG 252
Query 224 CTGAAGCAGAAACCAAACCCAT-CTCTAAACCTCTCGTTCTCTGGCTCAATGGAGGACCT 282
| || ||||||||| || |||| ||||||||||||||| |||||||||||||||||||||
Sbjct 253 CCGAGGCAGAAACC-AATCCATCCTCTAAACCTCTCGTCCTCTGGCTCAATGGAGGACCT 311
Query 283 GGATGTTCATCATTAGGTGTTGGTGCATTCTCTGAGAATGGACCTTTTAGACCAAAGGGA 342
||||||||||| || ||||||||||||||||| ||||||||||| ||||||||||| |||
Sbjct 312 GGATGTTCATCTTTGGGTGTTGGTGCATTCTCAGAGAATGGACCATTTAGACCAAAAGGA 371
Query 343 TCAATCTTGGT-GAGAAATCAACACAGCTGGAATCAAGAGGCTAATATGTTGTATCTGGA 401
|||||||||| || |||||||| |||||||| ||||||||||||||||||||| | ||
Sbjct 372 CCAATCTTGGTCAAG-AATCAACATAGCTGGAACCAAGAGGCTAATATGTTGTATTTAGA 430
Query 402 GACACCTGTTGGAGTTGGATTTTCTTATGCAAATGAGAGCTCCTC-TTATGAGGGTGTGA 460
||||||||||||||||||||| |||||| ||| | | |||||| | |||||||||||| |
Sbjct 431 GACACCTGTTGGAGTTGGATTCTCTTATTCAACTCAAAGCTCC-CATTATGAGGGTGTTA 489
Query 461 ATGATAAGATCACTGCAAAAGACAATCTTGTGTTCTTGCAAAAATGGTTCCTCAAATTCC 520
|||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 490 ATGACAAGATCACTGCAAGAGACAATCTTGTGTTCTTGCAAAGATGGTTCCTCAAATTCC 549
Query 521 CTCAATATCTCAA-CAGAAGTCTCTTCATCACTGGTGAAAGCTATGCTGGCCATTATGTT 579
|||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 550 CTCATTATCTCAATC-GAAGTCTCTTCATCACTGGTGAAAGCTATGCTGGCCATTATGTT 608
Query 580 CCTCAGTTGGCTCAGCTTATGATTCAGTACAACAAGAAGCA-CAATTTGTTTAATCTCAA 638
||||| | |||||||||||||||||||||||||||||||| || |||||| ||||| |
Sbjct 609 CCTCAACTAGCTCAGCTTATGATTCAGTACAACAAGAAGCATCA-TTTGTTCAATCTGAG 667
Query 639 AGGCATTGCTATTGGCAATCCGGTTATGGAGTTTGCAACGGATTTCAATTCACGAGCAGA 698
||| |||||||||||||| |||||| ||||||||||||||||||||||||| || || ||
Sbjct 668 AGGAATTGCTATTGGCAACCCGGTTTTGGAGTTTGCAACGGATTTCAATTCGCGCGCTGA 727
Query 699 GTATTTCTGGTCTCACGGGTTGATATCGGATCCAACTTACAAATTGTTCACATCTT-CTT 757
||| ||||||||||| || |||||||| ||| | ||||||||| |||||||||||| ||
Sbjct 728 GTACTTCTGGTCTCATGGCTTGATATCTGATTCGACTTACAAAATGTTCACATCTTACT- 786
Query 758 GTAATTACTCGAGATTTTTGAGTGAGTACCATAGAGGATCAGTGTCGAGTATGTGCACTA 817
||||||||||| | | | ||||||||||| ||||||| ||| |||| ||||||||| |||
Sbjct 787 GTAATTACTCGCGCTATGTGAGTGAGTACTATAGAGGGTCAATGTCTAGTATGTGCTCTA 846
Query 818 AAGTGCTAAGTCAAGTTGGCA-TCGAAACAAGTAGATTCATAGACAAATATGACGTTACT 876
||||| | ||||||||| ||| | || |||||| | || | ||||||||||| ||||||
Sbjct 847 AAGTGATGAGTCAAGTTAGCACT-GAGACAAGTCGGTTTGTCGACAAATATGATGTTACT 905
Query 877 CTTGACGTCTGCATTCCCTCTGTGCTATCTCAATCCAAAGTAGTTAGCCCTCAACCTCAA 936
|| || || ||||||||||||||||||||||||||||||||||| ||||| ||||| ||
Sbjct 906 CTCGATGTTTGCATTCCCTCTGTGCTATCTCAATCCAAAGTAGTAAGCCC-CAACC--AA 962
Query 937 CAAGTGGGAGAGA-CGGTGGATGTGTGTCTAGAAGATGAGACGGTGAACTATCTTAACCG 995
|||||||| | | |||||||| ||| | |||||||||||||| |||||||| |||||
Sbjct 963 ---GTGGGAGA-ATCTGTGGATGTTTGTGTCGAAGATGAGACGGTTAACTATCTAAACCG 1018
Query 996 GA-GAGATGTGCAAAAAGCTCTCCACGCTCGGCTTGTCGGAACT-CGCAAATGGACTGTT 1053
| |||||||||| ||||||| || |||||||| | ||| | || ||||||| |||
Sbjct 1019 -ACGAGATGTGCAGGAAGCTCTTCATGCTCGGCTCATTGGAG-TACGTGAATGGACAGTT 1076
Query 1054 TGCAGCGATGTGCTGGATTACGAAGTACTTGATGTGGAAGTACCAACGATAAATATCGTA 1113
|||||| ||||||| |||||| || | |||||||||||| ||||||| || |||||||||
Sbjct 1077 TGCAGCAATGTGCTTGATTACCAATTGCTTGATGTGGAAATACCAACAATTAATATCGTA 1136
Query 1114 GGAAGTCTTGTTAAAGCTGGTGTTCCAGTTTTTGTGTACAGTGGAGATCAAGACTCTGTG 1173
|| || ||||||||||| || ||||||||| |||| ||||||||||||||||| ||||||
Sbjct 1137 GGGAGCCTTGTTAAAGCAGGAGTTCCAGTTCTTGTCTACAGTGGAGATCAAGATTCTGTG 1196
Query 1174 ATTCCGTTAACCGGAAGTAGAACATTAGTGAAGC-GACTGGCTGAAGAGTTGGGACTAAG 1232
|| || || ||||||||||||| ||||| | || || |||| || | |||||||| ||
Sbjct 1197 ATCCCTTTGACCGGAAGTAGAATTTTAGTCA-GCAGATTGGCCAAACAATTGGGACTGAG 1255
Query 1233 AACAACCGTGCCTTATCGAGTTTGGTTCGCAGGACAACAGGTTGGTGGGTGGACTCAAGT 1292
||||| || ||||||||||| ||||| ||||||||||||||||| ||||||||||||||
Sbjct 1256 AACAAGTGTACCTTATCGAGTCTGGTTTGCAGGACAACAGGTTGGCGGGTGGACTCAAGT 1315
Query 1293 TTATGGGAACA-CATTGGCGTTTGCCACTGTGAGAGGAGCAGCCCACGAGGTACCATTCT 1351
|||||||| | ||| | ||||| || ||| ||||||| | |||||||| |||||||
Sbjct 1316 CTATGGGAATGTC-TTGTCATTTGCAACGGTGCGAGGAGCTTCACACGAGGTCCCATTCT 1374
Query 1352 CGCAGCCCGCGAGAGCGCTTGTGT-TGTTTAAAGCATTCTTGGGTGGTCGTCCTCTCCCT 1410
| ||||| | |||| | ||||| | |||| || || ||||||| |||| |||||| |||
Sbjct 1375 CACAGCCTGAGAGATCACTTGT-TCTGTTCAAGGCGTTCTTGGACGGTCATCCTCTTCCT 1433
Query 1411 GAAGAATTCTAATGCGTTTACCAT--TTTCT-GAGCTT 1445
|||||||||| || |||||||| ||| | ||||||
Sbjct 1434 GAAGAATTCTGATA--TTTACCATGATTTGTTGAGCTT 1469
> Ahg489176 jgi|Araly1|489176|fgenesh2_kg.6__2310__AT5G23210.1
Length=1839
Score = 69.4 bits (37), Expect = 8e-11
Identities = 55/63 (87%), Gaps = 4/63 (6%)
Strand=Plus/Plus
Query 250 AAACCTCTCGTTCTCTGGCTCAATGGAGGACCTGGATGTTCATCA-TTAGG-TGTTGGTG 307
||||||||| | || |||||||||||||||||||||||||||||| || || | |||| |
Sbjct 470 AAACCTCTCCTCCTTTGGCTCAATGGAGGACCTGGATGTTCATCAATT-GGAT-TTGGAG 527
Query 308 CAT 310
|||
Sbjct 528 CAT 530
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61553835920
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5