BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G33550.1
Length=1194
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933942 jgi|Araly1|933942|scaffold_401930.1 1616 0.0
> Ahg933942 jgi|Araly1|933942|scaffold_401930.1
Length=997
Score = 1616 bits (875), Expect = 0.0
Identities = 958/996 (96%), Gaps = 13/996 (1%)
Strand=Plus/Plus
Query 84 AAGGAATATTCCGTTTGAATGGCTCTGGAACAGTTAGGATTAGGAGTGAGCGCCGTTGAC 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3 AAGGAATATTCCGTTTGAATGGCTCTGGAACAGTTAGGATTAGGAGTGAGCGCCGTTGAC 62
Query 144 GGTGGAGAGAACAGTAGCGCGCCGTCAAATGACGGTGGAGATGACGGCGTTAAGACGGCG 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 63 GGTGGAGAGAACAGTAGCGCGCCGTCAAATGACGGTGGAGATGACGGCGTTAAGACGGCG 122
Query 204 AGACTTCCTCGTTGGACGAGACAAGAGATTCTGGTTCTGATTCAAGGGAAGAGAGTGGCG 263
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 123 AGACTTCCTCGTTGGACGAGACAAGAGATTCTGGTGCTGATTCAGGGGAAGAGAGTGGCA 182
Query 264 GAGAACAGAGTCCGGCGAGGGAGAGCGGCGGGTATGGCTCTCGGGTCGGGTCAAATGGAG 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 GAGAACAGAGTCCGGCGAGGGAGAGCGGCGGGTATGGCTCTCGGGTCGGGTCAAATGGAG 242
Query 324 CCTAAATGGGCTTCTGTTTCGTCTTACTGTAAACGTCACGGTGTAAATCGTGGGCCGGTT 383
|||||||||||||| || || |||||||| | ||||||||||||||||||||||||||||
Sbjct 243 CCTAAATGGGCTTCGGTATCATCTTACTGCAGACGTCACGGTGTAAATCGTGGGCCGGTT 302
Query 384 CAGTGCCGGAAAAGATGGAGCAATCTCGCCGGAGATTATAAGAAGATTAAAGAATGGGAG 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 CAGTGCCGGAAAAGATGGAGCAATCTCGCCGGAGATTATAAGAAGATTAAAGAATGGGAG 362
Query 444 TCTCAGATTAAGGAAGAGACTGAGTCCTATTGGGTTATGAGGAATGATGTTCGTAGAGAG 503
|||||||||||||||||||||||||| |||||||| |||||||||||||||||| | |||
Sbjct 363 TCTCAGATTAAGGAAGAGACTGAGTCTTATTGGGTGATGAGGAATGATGTTCGTCGGGAG 422
Query 504 AAGAAGCTTCCTGGTTTTTTCGATAAGGAGGTTTATGATATTGTTGACGGTGGTGTGATT 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 AAGAAGCTTCCTGGTTTTTTCGATAAGGAGGTTTATGATATTGTTGACGGTGGTGTGATT 482
Query 564 CCTCCGGCGGTTCCGGTTCTTTCGCTTGGATTGGCTCCGGCGTCAGACGAGGGATTGTTG 623
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 483 CCTCCGGCGGTTCCGGTTCTTTCGCTTGGATTGGCTCCGGCGTCGGAGGAGGGATTGTTG 542
Query 624 TCTGATTTAGATCGGAGAGAA------AG---TCCTGAGAAGTTGAATTCTACTCCGGTG 674
||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 543 TCTGATTTAGATCGGAGAGAATCGGTGAGAAGTCCTGAGAAGTTGAATTCTACTCCGGTG 602
Query 675 GCTAAATCAGTTACTGATGTTATAGACAAAGAGAAGCAAGAAGCTTGTGTAGCAGATCAA 734
|| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 603 GCCAAATCAGTTACTGATGTTATAGACAAAGAGAAGCAAGAAGCTTGTGGAGCAGATCAA 662
Query 735 GGTAGAGTGAAAGAGAAACAGCCAGAAGCAGCAAACGTGGAAGGTGGATCGACATCACAA 794
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 663 GGTAGAGTGAAAGAGAAACATCCAGAAGCAGCAAACGTGGAAGGTGGATCGACATCACAA 722
Query 795 GAAGAGAGGAAGCGTAAACGGACATCTTTTGGTgaaaaggaaga-g--gaagaagaagaa 851
|||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||
Sbjct 723 GAAGAGAGGAAGCGTAAACGGACATCTTTTGGTGAAAAAGAAGAAGAAGAAGAAGAAGAA 782
Query 852 ggagaaacaaagaagatgcagaatcagttgatagagatactagaaagaaaCGGGCAGTTG 911
|||||||||||||| ||||||| ||| ||||||||||||||||||||||| |||||||||
Sbjct 783 GGAGAAACAAAGAACATGCAGAGTCAATTGATAGAGATACTAGAAAGAAATGGGCAGTTG 842
Query 912 TTGGCGGCACAGCTTGAGGTTCAGAATTTAAACTTAAAACTAGACAGAGAGCAAAGAAAA 971
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 843 TTGGCGGCACAGCTTGAGGTTCAGAATTTAAACTTAAAACTAGACAGAGAGCAAAGAAAA 902
Query 972 GATCACGGTGATAGCTTAGTCGCTGTTCTCAATAAGCTCGCTGATGCTGTGGCAAAAATC 1031
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 903 GATCACGGTGATAGCTTAGTCGCTGTTCTCAACAAGCTCGCAGATGCTGTGGCAAAAATC 962
Query 1032 GCGGATAAGATGTAGATTTAGTAAAAGTTAGTTGTA 1067
|||||||||||||||||||||| || ||||||||||
Sbjct 963 GCGGATAAGATGTAGATTTAGTCAA-GTTAGTTGTA 997
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44565689973
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5