BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G33560.2
Length=1449
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482302 jgi|Araly1|482302|fgenesh2_kg.4__1362__AT2G33560.1 1989 0.0
Ahg931779 jgi|Araly1|931779|scaffold_304236.1 110 4e-23
Ahg912255 jgi|Araly1|912255|Al_scaffold_0001_2509 110 4e-23
Ahg910962 jgi|Araly1|910962|Al_scaffold_0001_1216 110 4e-23
Ahg908575 jgi|Araly1|908575|Al_scaffold_0002_1656 110 4e-23
Ahg908003 jgi|Araly1|908003|Al_scaffold_0002_1084 110 4e-23
Ahg890470 jgi|Araly1|890470|Al_scaffold_0007_2456 110 4e-23
Ahg359579 jgi|Araly1|359579|fgenesh1_pg.C_scaffold_408000001 110 4e-23
Ahg359133 jgi|Araly1|359133|fgenesh1_pg.C_scaffold_22000003 110 4e-23
Ahg351768 jgi|Araly1|351768|fgenesh1_pg.C_scaffold_6002361 110 4e-23
Ahg347204 jgi|Araly1|347204|fgenesh1_pg.C_scaffold_5000596 110 4e-23
Ahg336732 jgi|Araly1|336732|fgenesh1_pg.C_scaffold_1003297 110 4e-23
> Ahg482302 jgi|Araly1|482302|fgenesh2_kg.4__1362__AT2G33560.1
Length=1369
Score = 1989 bits (1077), Expect = 0.0
Identities = 1256/1339 (94%), Gaps = 25/1339 (2%)
Strand=Plus/Plus
Query 30 AACTAACGGCTATATTCTCTCTG-ATATTC-AAAA-TT-T---G--C-TCGAAGAAACGA 79
||||||||||||||||| || || || ||| |||| || | | | |||||||||||
Sbjct 1 AACTAACGGCTATATTCCCT-TGAAT-TTCAAAAATTTCTCAAGTCCAGCGAAGAAACGA 58
Query 80 CGATGG-CAGCCGAAACGAAGGTTCAGGTTTCAGATCCAGAGGCAGAGTTTCTTAATTCG 138
|||||| || ||||||||| ||||||| | |||||||||||| |||| ||||| || |||
Sbjct 59 CGATGGCCA-CCGAAACGAGGGTTCAGATCTCAGATCCAGAGTCAGAATTTCTGAACTCG 117
Query 139 AAGCAGGAGACTGGATACGAGTGGGAGCTTTTCAAGGAGAACGTCCGGCCATTGAAGAGA 198
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 AAGCAGGAGACTGGTTACGAGTGGGAGCTTTTCAAGGAGAACGTCCGGCCATTGAAGAGA 177
Query 199 GGTCGCAATGTTGGTATTCTCAACCACGCTCTCAAATCTCACTCTGACCACCAATTGAGA 258
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 178 GGTCGCAATGTTGGTATTCTCAACCACGCTCTCAAATCTCACTCCGACCACCAATTGAGG 237
Query 259 AAGAATCTCATCGAGAAACGCAGGAATTTGATTGAAGCCATTGATGAGTATGAAGGAGAT 318
|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 238 AAGAATCTCATCGAGAAACGAAGGAATTTGATTGAAGCCATTGATGAGTATGATGGAGAC 297
Query 319 GACCCTTTATCTCCATGGATAGAGTGTATAAAATGGGTACAAGAGGCTTTTCCACCAGGA 378
|||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 298 GACCCTTTGTTTCCATGGATTGAGTGTATAAAATGGGTACAAGAGGCTTTTCCACCAGGA 357
Query 379 GGAGAATGTTCAGGACTGTTAGTGATATATGAGCAATGTGTTCGTAAATTTTGGCACTCT 438
|||||||| |||||||||||||||||||||||||| |||||||| || ||||||||||||
Sbjct 358 GGAGAATGCTCAGGACTGTTAGTGATATATGAGCAGTGTGTTCGCAAGTTTTGGCACTCT 417
Query 439 GAACGTTACAAGGATGATCTTCGTTATCTTAAAGTCTGGTTGGAATATGCGGAGCATTGC 498
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 418 GAACGTTACAAGGATGATCTTCGTTATCTCAAAGTCTGGTTGGAATATGCGGAGCATTGC 477
Query 499 GCTGATGCGGAAGTGATTTACAAGTTTTTGGAGGTCAATGAGATTGGAAAGACACATGCT 558
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 478 TCTGATGCGGAAGTGATTTACAAGTTTTTGGAGGTCAATGACATTGGAAAGACACATGCT 537
Query 559 GTCTACTATATAGCTTATGCTTTGCACATTGAGTTTAAGAATAAGGTCAAAACTGCTAAT 618
|||||||| |||||||||||||||||||| ||||||||||| ||||| ||||||||||||
Sbjct 538 GTCTACTACATAGCTTATGCTTTGCACATGGAGTTTAAGAACAAGGTGAAAACTGCTAAT 597
Query 619 GAGATCTTCAATCTTGGAATCTCTAGGGATGCAAAGCCAGTGGAAAAGTTGAATGACGCG 678
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 598 GAGATCTTCAATCTCGGAATCTCTAGAAATGCAAAGCCAGTGGAAAAGTTGAATGATGCG 657
Query 679 TACAAGAAGTTTATGGTGAGAACGATGAGAAGGTCCAACACAGCTGATGAACAGGAACCA 738
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 658 TACAAGAAGTTCATGGTGAGAACGATGAGAAGGTCCAACACAGCTGATG---AGGAACCA 714
Query 739 AAGGAGAATAATGACTTACCGTCAAGAAGCTTTGGCACTTTATTGTCCAGGGGAGATAAT 798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 AAGGAGAATAATGACTTACCGTCAAGAAGCTTTGGCACTTTATTGTCCAGGGGAGATAAT 774
Query 799 AATGCAAGAAGGCAGGCGTTAGGAAGTTCTAACCCACAAGCCAAAAAGCTAAAGCCAAAT 858
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 775 AATGCAAGAAGGCAGGCGTTAGGAAGTTCTAACCCACAAGCCAAAAAACTAAAGCCAAAT 834
Query 859 CAATCATCCAAGACACCTTTTGCTATCTACGCAGATGCAGTTTCAGACACCACATCAGGG 918
|| |||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||
Sbjct 835 CACTCATCCAAGACACCTTTTCCTATCTACACAGATGCAGTTTCAGACACTACATCAGGG 894
Query 919 AATCAACCAGAGTCAGACAAGTCAAGACCAGAGTTTGGTAGTTGGCTCATGCTTGGAGGC 978
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 895 AATCAACCAGAGTCAGACAAGTCAAAACCAGAGTTTGGTAGTTGGCTCATGCTTGGAGGC 954
Query 979 AGAGCAGAGAGGAACAAAGAAAACAATTCTTTACCTAGAAAATGGGCATCATTCAAGGTT 1038
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 AGAGCAGAGAGGAACAAAGAAAACAATTCTTTACCTAGAAAATGGGCATCATTCAAGGTT 1014
Query 1039 CCTCAGAAACCCATTGTGAGAACTGTTGCAGCAGCATCTGCTTCCACCTTTGAGGTTTTT 1098
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 1015 CCTCAGAAACCCATTGTGAGAACTG---CAGCAGCCTCTGCTTCCACCTTTGAGGTTTTT 1071
Query 1099 GTCGATgaagaagaatgtacagaagaggaagaagaaaagaagaagaaTGATGAAACTATC 1158
||||||||||||||||| |||||||||| || ||| ||||||||||||||||||||||||
Sbjct 1072 GTCGATGAAGAAGAATGCACAGAAGAGGGAGGAGACAAGAAGAAGAATGATGAAACTATC 1131
Query 1159 TCATCATCATCAAACGTTCTGCCCCTTAATGGCGGCCGTGAGATaaaaaaaGAAACAGAG 1218
|||||||||||||||||||| |||||| ||| ||||||||| ||||| ||||||||||||
Sbjct 1132 TCATCATCATCAAACGTTCTACCCCTTCATGACGGCCGTGACATAAAGAAAGAAACAGAG 1191
Query 1219 CTGCTACGACAGAACCCTTTAAGACATTTCCCACCCAACAGCTTCCTACGATGATGAT-A 1277
||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1192 CTGCTGCGACAGAACCCTTTAAGACATTTCCCACCCAGCAGCTTCCTACGATGATGATGA 1251
Query 1278 T-TG-GACTTTCTTCTCTACACGATCTTATGGTTTGAGATTTGAGCTTTTGTCTATAAAG 1335
| | ||| ||| |||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1252 TATTAGACATTCATCTCTACACGATGTTCTGGTTTGAGATTTGAGCTTTTGTCTATAAAG 1311
Query 1336 CTCCTTGTGT--GTTTTTG 1352
|||||||| | |||||||
Sbjct 1312 CTCCTTGTATTTGTTTTTG 1330
Score = 54.7 bits (29), Expect = 2e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 1362 ATTTGTTTTTGTGATGTACTGGGATATAC 1390
|||||||||||||||||||||||||||||
Sbjct 1320 ATTTGTTTTTGTGATGTACTGGGATATAC 1348
> Ahg931779 jgi|Araly1|931779|scaffold_304236.1
Length=335
Score = 110 bits (59), Expect = 4e-23
Identities = 64/66 (97%), Gaps = 2/66 (3%)
Strand=Plus/Plus
Query 487 GCGGAGCATTGCGCTGATGCGGAAGTGATTTACAAGTTTTTGGAGGTCAATGAGATTGGA 546
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 84 GCGGAGCATTGCGCTGATGCGGAAGTGATTTACAAGTTTTTGGAGGTCAATGAGATTG-A 142
Query 547 -AAGAC 551
|||||
Sbjct 143 TAAGAC 148
> Ahg912255 jgi|Araly1|912255|Al_scaffold_0001_2509
Length=429
Score = 110 bits (59), Expect = 4e-23
Identities = 64/66 (97%), Gaps = 2/66 (3%)
Strand=Plus/Plus
Query 487 GCGGAGCATTGCGCTGATGCGGAAGTGATTTACAAGTTTTTGGAGGTCAATGAGATTGGA 546
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 64 GCGGAGCATTGCGCTGATGCGGAAGTGATTTACAAGTTTTTGGAGGTCAATGAGATTG-A 122
Query 547 -AAGAC 551
|||||
Sbjct 123 TAAGAC 128
> Ahg910962 jgi|Araly1|910962|Al_scaffold_0001_1216
Length=363
Score = 110 bits (59), Expect = 4e-23
Identities = 64/66 (97%), Gaps = 2/66 (3%)
Strand=Plus/Plus
Query 487 GCGGAGCATTGCGCTGATGCGGAAGTGATTTACAAGTTTTTGGAGGTCAATGAGATTGGA 546
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 GCGGAGCATTGCGCTGATGCGGAAGTGATTTACAAGTTTTTGGAGGTCAATGAGATTG-A 59
Query 547 -AAGAC 551
|||||
Sbjct 60 TAAGAC 65
> Ahg908575 jgi|Araly1|908575|Al_scaffold_0002_1656
Length=462
Score = 110 bits (59), Expect = 4e-23
Identities = 64/66 (97%), Gaps = 2/66 (3%)
Strand=Plus/Plus
Query 487 GCGGAGCATTGCGCTGATGCGGAAGTGATTTACAAGTTTTTGGAGGTCAATGAGATTGGA 546
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 64 GCGGAGCATTGCGCTGATGCGGAAGTGATTTACAAGTTTTTGGAGGTCAATGAGATTG-A 122
Query 547 -AAGAC 551
|||||
Sbjct 123 TAAGAC 128
> Ahg908003 jgi|Araly1|908003|Al_scaffold_0002_1084
Length=429
Score = 110 bits (59), Expect = 4e-23
Identities = 64/66 (97%), Gaps = 2/66 (3%)
Strand=Plus/Plus
Query 487 GCGGAGCATTGCGCTGATGCGGAAGTGATTTACAAGTTTTTGGAGGTCAATGAGATTGGA 546
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 64 GCGGAGCATTGCGCTGATGCGGAAGTGATTTACAAGTTTTTGGAGGTCAATGAGATTG-A 122
Query 547 -AAGAC 551
|||||
Sbjct 123 TAAGAC 128
> Ahg890470 jgi|Araly1|890470|Al_scaffold_0007_2456
Length=429
Score = 110 bits (59), Expect = 4e-23
Identities = 64/66 (97%), Gaps = 2/66 (3%)
Strand=Plus/Plus
Query 487 GCGGAGCATTGCGCTGATGCGGAAGTGATTTACAAGTTTTTGGAGGTCAATGAGATTGGA 546
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 64 GCGGAGCATTGCGCTGATGCGGAAGTGATTTACAAGTTTTTGGAGGTCAATGAGATTG-A 122
Query 547 -AAGAC 551
|||||
Sbjct 123 TAAGAC 128
> Ahg359579 jgi|Araly1|359579|fgenesh1_pg.C_scaffold_408000001
Length=489
Score = 110 bits (59), Expect = 4e-23
Identities = 64/66 (97%), Gaps = 2/66 (3%)
Strand=Plus/Plus
Query 487 GCGGAGCATTGCGCTGATGCGGAAGTGATTTACAAGTTTTTGGAGGTCAATGAGATTGGA 546
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 64 GCGGAGCATTGCGCTGATGCGGAAGTGATTTACAAGTTTTTGGAGGTCAATGAGATTG-A 122
Query 547 -AAGAC 551
|||||
Sbjct 123 TAAGAC 128
> Ahg359133 jgi|Araly1|359133|fgenesh1_pg.C_scaffold_22000003
Length=489
Score = 110 bits (59), Expect = 4e-23
Identities = 64/66 (97%), Gaps = 2/66 (3%)
Strand=Plus/Plus
Query 487 GCGGAGCATTGCGCTGATGCGGAAGTGATTTACAAGTTTTTGGAGGTCAATGAGATTGGA 546
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 64 GCGGAGCATTGCGCTGATGCGGAAGTGATTTACAAGTTTTTGGAGGTCAATGAGATTG-A 122
Query 547 -AAGAC 551
|||||
Sbjct 123 TAAGAC 128
> Ahg351768 jgi|Araly1|351768|fgenesh1_pg.C_scaffold_6002361
Length=489
Score = 110 bits (59), Expect = 4e-23
Identities = 64/66 (97%), Gaps = 2/66 (3%)
Strand=Plus/Plus
Query 487 GCGGAGCATTGCGCTGATGCGGAAGTGATTTACAAGTTTTTGGAGGTCAATGAGATTGGA 546
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 64 GCGGAGCATTGCGCTGATGCGGAAGTGATTTACAAGTTTTTGGAGGTCAATGAGATTG-A 122
Query 547 -AAGAC 551
|||||
Sbjct 123 TAAGAC 128
> Ahg347204 jgi|Araly1|347204|fgenesh1_pg.C_scaffold_5000596
Length=489
Score = 110 bits (59), Expect = 4e-23
Identities = 64/66 (97%), Gaps = 2/66 (3%)
Strand=Plus/Plus
Query 487 GCGGAGCATTGCGCTGATGCGGAAGTGATTTACAAGTTTTTGGAGGTCAATGAGATTGGA 546
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 64 GCGGAGCATTGCGCTGATGCGGAAGTGATTTACAAGTTTTTGGAGGTCAATGAGATTG-A 122
Query 547 -AAGAC 551
|||||
Sbjct 123 TAAGAC 128
> Ahg336732 jgi|Araly1|336732|fgenesh1_pg.C_scaffold_1003297
Length=489
Score = 110 bits (59), Expect = 4e-23
Identities = 64/66 (97%), Gaps = 2/66 (3%)
Strand=Plus/Plus
Query 487 GCGGAGCATTGCGCTGATGCGGAAGTGATTTACAAGTTTTTGGAGGTCAATGAGATTGGA 546
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 64 GCGGAGCATTGCGCTGATGCGGAAGTGATTTACAAGTTTTTGGAGGTCAATGAGATTG-A 122
Query 547 -AAGAC 551
|||||
Sbjct 123 TAAGAC 128
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54202418635
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5