BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G33570.1
Length=1838
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933944 jgi|Araly1|933944|scaffold_401932.1 2392 0.0
Ahg492851 jgi|Araly1|492851|fgenesh2_kg.7__2284__AT4G20170.1 106 7e-22
> Ahg933944 jgi|Araly1|933944|scaffold_401932.1
Length=1528
Score = 2392 bits (1295), Expect = 0.0
Identities = 1454/1532 (95%), Gaps = 5/1532 (0%)
Strand=Plus/Plus
Query 119 CCGTCGTCGGGaaaaaaaaCATGAGGAAGGAAGTTTTGCCGCCGGTGTTATCAACCACCA 178
|||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 CCGTCGCCGGGATAAAAAACATGAGGAAGGAAGTTTTGCCGCCGGTGCTATCAACCACCA 60
Query 179 CAGTATGTTTCGAGAAGAAACCAATAATTGCTACATTACTAGCTCTCTCTCTCGTCATGA 238
| || || ||||||||||| ||| ||||||||||||| ||||||||||||||||||||||
Sbjct 61 CCGTCTGCTTCGAGAAGAAGCCATTAATTGCTACATTGCTAGCTCTCTCTCTCGTCATGA 120
Query 239 TTGTCTGGAACCTTCCTCCTTACTACCACAACCTCATCTCCACCGCTCGTCCCTGCTCCG 298
|| |||||||||||||||||||||| |||||||||||||||||||| || ||||||||||
Sbjct 121 TTATCTGGAACCTTCCTCCTTACTATCACAACCTCATCTCCACCGCACGCCCCTGCTCCG 180
Query 299 CCGTcaccaccaccaccaccaccaccTTACTCTCCTCATCGAACTTCACTTCGGCGGA-G 357
|||||||||||||||||||||||| |||| ||||||||||||||||| |||| || |
Sbjct 181 CCGTCACCACCACCACCACCACCA---TACTTTCCTCATCGAACTTCACAGCGGC-GACG 236
Query 358 AATTTCACCACCTCTCTCTCAACGACAACTGCAGCAGCTTCTCAGAAGTACGATTCAACT 417
||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||
Sbjct 237 AATTTCACCACCTCTCTCTCAACCACAACTGCTGCTGCTTCTCAGAAGTACGATTCAACT 296
Query 418 CCCTCAGATCCGAACAAACGCGTTTTCCAACCGTTCGGAAACGCGGCGGCGTTATTCGTA 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 CCCTCAGATCCGAACAAACGCGTTTTCCAACCGTTCGGAAACGCGGCGGCGTTATTCGTA 356
Query 478 CTAATGGGAGCTTACCGCGGCGGTCCAACGACGTTTTCCGTTATCGGACTCGCGTCGAAA 537
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 357 CTAATGGGAGCTTACCGCGGCGGTCCAACGACGTTTTCCGTTATCGGACTCGCGTCAAAA 416
Query 538 CCGATCCACGTTTACGGAAAACCATGGTACAAGTGTGAGTGGATATCTAACAATGGAACT 597
||||||||||||| ||| || |||||||||||||||||||||||||| ||||||||||||
Sbjct 417 CCGATCCACGTTTTCGGGAAGCCATGGTACAAGTGTGAGTGGATATCAAACAATGGAACT 476
Query 598 TCGATTCGAGCTAAAGCACAGAAGATTCTACCAGATTGGGGATACGGACGAGTCTACACC 657
||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||
Sbjct 477 TCGATTCGAGCTAAAGCACAGAAGATTCTACCAGATTGGGGCTATGGCCGAGTCTACACC 536
Query 658 GTCGTCGTCGTCAATTGCACTTTCAATTCAAACCCTAACTCCGATAACACCGGAGGTAAA 717
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 GTCGTCGTCGTCAATTGCACTTTCAATTCAAACCCTAACTCCGATAACACCGGAGGTAAG 596
Query 718 CTCATTCTCAACGCTTACTACAACGAATCTCCCAAACTCTTTGAACGATTCACTACGTTA 777
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 597 CTCATACTCAACGCTTACTACAACGAATCTCCGAAACTCTTTGAACGATTCACTACGTTA 656
Query 778 GAAGAATCAGCTGGAATCTACGACGAATCGAAATACTCGCCGCCGTATCAGTACGATTAC 837
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 657 GAGGAATCAGCTGGAATCTACGACGAATCGAAATACTCGCCGCCATATCAGTACGATTAC 716
Query 838 CTCTATTGTGGCTCGTCACTGTACGGTAACGTGAGCGCGTCGCGTATGAGAGAGTGGATG 897
||||| ||||||||||| |||||||| ||||||||| |||||||||||||||||||||||
Sbjct 717 CTCTACTGTGGCTCGTCTCTGTACGGAAACGTGAGCTCGTCGCGTATGAGAGAGTGGATG 776
Query 898 GCTTACCACGCTTGGTTCTTTGGTGACAAATCGCATTTTGTTTTCCACGATGCTGGTGGT 957
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 GCTTACCATGCTTGGTTCTTTGGTGACAAATCGCATTTTGTTTTCCACGATGCTGGTGGA 836
Query 958 GTGTCGCCGGAAGTTAGGAAGGTTCTTGAGCCGTGGATTCGAGCTGGGAGGGTCACGGTT 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 GTGTCGCCGGAAGTTAGGAAGGTTCTTGAGCCGTGGATTCGAGCTGGGAGGGTCACGGTT 896
Query 1018 CAGAATATTCGGGATCAGTCGCAGTATGATGGTTACTACTATAATCAGTTTCTTATTGTT 1077
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 CAGGATATTAGGGATCAGTCGCAGTATGATGGTTACTACTATAATCAGTTTCTTATTGTT 956
Query 1078 AATGATTGCTTGCATCGGTATCGATACGCTGCGAATTGGACCTTCTTCTTCGATGTCGAT 1137
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 957 AATGATTGTTTGCATCGGTATCGATATGCTGCGAATTGGACCTTCTTCTTCGATGTTGAT 1016
Query 1138 GAGTATATCTATTTGCCGCATGGTAATACACTCGAATCCGTGCTCGATGAGTTCTCGGTT 1197
||||| || ||| |||||||||| |||||||| ||||| |||||| | |||||||||||
Sbjct 1017 GAGTACATATATCTGCCGCATGGGAATACACTTGAATCTGTGCTCCACGAGTTCTCGGTG 1076
Query 1198 AACACGCAGTTTACGATTGAGCAGAATCCAATGTCTAGTGTTCTTTGCATAAACGACTCT 1257
|| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 1077 AATACGCAGTTTACGATTGAGCAGAATCCAATGTCTAGTGTTCTTTGCTTAAATGACTCC 1136
Query 1258 TCTCAAGATTATCCAAGGCAATGGGGATTTGAGAAATTGTTATTTAAGGATTCAAGGACG 1317
|||||||||||||| |||||||||||||||||||| ||| |||||||||||||||| ||
Sbjct 1137 TCTCAAGATTATCCCAGGCAATGGGGATTTGAGAAGTTGCTATTTAAGGATTCAAGAACA 1196
Query 1318 AAGATACGACGTGATAGAAAATATGCAATCCAAGCGAAGAACGCATTTGCTACAGGAGTT 1377
|| |||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1197 AACATACGACGTGATAGGAAATATGCGATCCAAGCGAAGAACGCATTTGCCACAGGAGTT 1256
Query 1378 CATATGTCTGAAAACATTGTAGGCAAAACACTACACAAGACAGAGACAAAGATTCGTTAT 1437
|| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1257 CACATGTCTGAAAACATAGTAGGCAAAACACTACACAAGACAGAGACAAAGATCCGTTAT 1316
Query 1438 TACCATTACCACAACACCATAACTGTGCATGAGGAGCTTTGTAGAGAGATGTTACCAAAT 1497
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1317 TACCATTACCACAACACTATAACTGTGCATGAGGAGCTTTGCAGAGAGATGTTACCAAAT 1376
Query 1498 TCAGCCAAGAAGAAGGTGACATTGTACAATAAGCTTCCGTATGTGTATGATGACAACATG 1557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 TCAGCCAAGAAGAAGGTGACATTGTACAATAAGCTTCCGTATGTGTATGATGACAACATG 1436
Query 1558 AAGAAGCTAGTGAAGACGATTAAAGAGTTTGAGCAGAAAAAACTTGGGACGGATGTGAAG 1617
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1437 AAGAAGCTAGTGAAGACGATTAAAGAGTTTGAGCAGAAAAAACTTGGGACCGATGTGAAG 1496
Query 1618 AATTTCTCATGACCATAATATAGCTGTAATCT 1649
||||||||||||||| |||||| |||||||||
Sbjct 1497 AATTTCTCATGACCAGAATATAACTGTAATCT 1528
> Ahg492851 jgi|Araly1|492851|fgenesh2_kg.7__2284__AT4G20170.1
Length=1753
Score = 106 bits (57), Expect = 7e-22
Identities = 245/331 (74%), Gaps = 32/331 (10%)
Strand=Plus/Plus
Query 827 AGTACGATTACCTCTATTGTGGCTCGTCACTGTACGGTAACGTGAGCGCGTC-GCGTATG 885
|||||||||||||||||||||||||||| || ||||| ||| | | | | | | | ||
Sbjct 794 AGTACGATTACCTCTATTGTGGCTCGTCTCTCTACGGAAACTT-ATCTCCACAGAGAATC 852
Query 886 AGAGAGTGGATGGCTTACCACGCTTGG-TTCTTTGGTGA-CAAATCGCATTTTGTTTTCC 943
||||| ||||| |||||||| | || | ||||| || || | || ||||| || | |
Sbjct 853 AGAGAATGGATCGCTTACCATG-TTCGATTCTTCGGAGAACGG-TCACATTTCGTGCTAC 910
Query 944 ACGATGCTGGTGGTG-TGTC--GCCGGAAGT-TAGGAAGGTTCTTGA-GCCGTGGATTCG 998
|||| || || || | | || | |||||| | || |||| || | ||| |||||| |
Sbjct 911 ACGACGCCGGAGG-GAT-TCATGA-GGAAGTGTTCGA-GGTT-TTAAAGCCATGGATT-G 964
Query 999 AGCT-GGGAGGGTCACGGTT-CA-GAATATTCGGGATCA-GT-CGCAGTATGATGGTTAC 1053
|||| ||||| || ||| || || || ||| | ||||| | || | | ||||| ||
Sbjct 965 AGCTAGGGAGAGTGACG-TTACATGA-TATAAGAGATCAAGAACG-ATTC-GATGGATAT 1020
Query 1054 TA-CTATAATCAGTTTCTT-ATTGTTAATGATTGCTTGCATCGGTATCGATACGCTG-CG 1110
|| | |||||||||| | | ||||| |||||||| |||||| ||||| ||| | || ||
Sbjct 1021 TATC-ATAATCAGTT-CATGATTGTGAATGATTGTTTGCATAGGTATAGATTCA-TGACG 1077
Query 1111 AATTGGACCTTCTTCTTCGATGTCGATGAGT 1141
|| |||| |||||||| ||||| |||||||
Sbjct 1078 AAGTGGATGTTCTTCTTTGATGTTGATGAGT 1108
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69019523940
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5