BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G33580.1 Length=2239 Score E Sequences producing significant alignments: (Bits) Value Ahg482304 jgi|Araly1|482304|fgenesh2_kg.4__1364__AT2G33580.1 3131 0.0 > Ahg482304 jgi|Araly1|482304|fgenesh2_kg.4__1364__AT2G33580.1 Length=2204 Score = 3131 bits (1695), Expect = 0.0 Identities = 2050/2216 (93%), Gaps = 46/2216 (2%) Strand=Plus/Plus Query 7 AACACCACAAAACATGGCTGCGTGTACACTCCACGCGCTCTCAG--T-CACCTTATTCCT 63 |||||||||||||||||||||| |||||||||||||||| |||| | |||||| ||||| Sbjct 1 AACACCACAAAACATGGCTGCGCGTACACTCCACGCGCTGTCAGTCTCCACCTTGTTCCT 60 Query 64 CCT--T-CTCTTCTTTGCCGTGTCACCGGCGAAAGCTCAGCAACCGTACGTCAACAACCA 120 ||| | |||||||| |||| ||||| |||||||||||||||||||||||||||||||| Sbjct 61 CCTCCTCCTCTTCTTCGCCGCATCACCAGCGAAAGCTCAGCAACCGTACGTCAACAACCA 120 Query 121 CCAGCTCGCCTGCGAGGTCCGTG-TCTACGACAACATAACCAACGGATTCACATGTAACG 179 ||||||||||||||||||||| | | | |||||||||||||||||||||||||||||||| Sbjct 121 CCAGCTCGCCTGCGAGGTCCGCGAT-TTCGACAACATAACCAACGGATTCACATGTAACG 179 Query 180 GCCC-ACCTTCTTGCCGCTCATACCTCACTTTCTGGTCTCAACCACCGTACAACACGGCG 238 |||| ||| ||||||||||| ||||||||||||| |||||||||||||||||||||||| Sbjct 180 GCCCAACC-TCTTGCCGCTCTTACCTCACTTTCTATTCTCAACCACCGTACAACACGGCG 238 Query 239 GACTCAATCGCCAAACTCCTCAACGTCTCCGCCGCAGAGATCCAATCAATCAACAACCTC 298 |||||||||||||||||||||||||| || |||||||||||||||||||||||||| || Sbjct 239 GACTCAATCGCCAAACTCCTCAACGTTTCTGCCGCAGAGATCCAATCAATCAACAAACTT 298 Query 299 CCCACAGCCACCACCAGAATCCCAACCCGTGAATTAGTCGTGATCCCAGCTAACTGCTCC 358 ||||| | |||||||||||||| |||||||| || |||||||||||||||||||||||| Sbjct 299 CCCACCGTCACCACCAGAATCCGTACCCGTGACTTGGTCGTGATCCCAGCTAACTGCTCC 358 Query 359 TG---------CTCCTCCTCCAGCGGAGGATTTTACCAACACAACGCCACTTACAATCTC 409 || |||||||||| ||||||||||||||| ||||||||||||||||||||| Sbjct 359 TGCTCCTCCTCCTCCTCCTCCTCCGGAGGATTTTACCAGCACAACGCCACTTACAATCTC 418 Query 410 TCCGGTAACAGAGGAGAT-GAAACCTATTTCTCAGTGGCTAACGATACTTACCAAGCTTT 468 ||||| |||||||||| | || || |||||||| |||||||||||||||||||||||||| Sbjct 419 TCCGGCAACAGAGGAG-TAGAGACGTATTTCTCGGTGGCTAACGATACTTACCAAGCTTT 477 Query 469 ATCCACGTGTCAAGCCATGATGTCACAAAACCGTTACGGCGAGAGACAACTAACCCCCGG 528 |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| Sbjct 478 ATCCACGTGTCAAGCCATGATGTCACAAAACCGTTACGGCGAGAAAGAACTAACCCCCGG 537 Query 529 CTTAAACCTCCTTGTTCCTCTCCGATGTGCTTGTCCCACCGCCAAACAAACCA-CCGCCG 587 |||||||||||||||||||||||||||||||| |||||||| || |||| || |||||| Sbjct 538 ATTAAACCTCCTTGTTCCTCTCCGATGTGCTTGCCCCACCGCGAATCAAA-CAGCCGCCG 596 Query 588 GATTTAAATATCTCCTGACTTACTTAGTCGCCATGGGAGATAGTATCTCCGGCATCGCCG 647 |||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 597 GATTTAAATATCTCTTGACTTACTTAGTCGCCAGGGGAGATAGTATCTCCGTCATCGCCG 656 Query 648 AGATGTTCAACAGCACATCCGCCGCCATAACCGAAGGTAACGAGCTTACATC---AGACA 704 | | |||||| |||||| ||||||| |||||||||||||||||||||||||| ||||| Sbjct 657 ATAGGTTCAATAGCACAACCGCCGCTATAACCGAAGGTAACGAGCTTACATCAGAAGACA 716 Query 705 ATATCTTCTTCTTCACACCGGTTCTAGTTCCTCTCACAACTGAACCTACCAAAATCGTTA 764 ||||| ||||||||| ||||| || |||||||||| ||||||||||||||||||||| | Sbjct 717 CTATCTACTTCTTCACGCCGGTGCTTGTTCCTCTCAGAACTGAACCTACCAAAATCGTGA 776 Query 765 TATCTCCGTCGCCTCCTCCTCCACCCGTTGTTGCTACGCCGCCTCAAACGCCAGTTGATC 824 ||||||||| |||||||||||||| ||| ||| |||||||||||||||||| || |||| Sbjct 777 AATCTCCGTCACCTCCTCCTCCACCTGTTATTGTTACGCCGCCTCAAACGCCGGTGGATC 836 Query 825 CTCCGGGA---TCTTCTTCTTCTCACAAATGGATCTACATCGGAATTGGAATCGGAGCTG 881 |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 837 CTCCGGGATCTTCTTCTTCTTCTCACAAATGGATTTACATCGGAATTGGAATCGGAGCTG 896 Query 882 GTTTGCTTCTCTTACTCTCAATCTTAGCTCTCTGCTTCTACAAACGAAGGTCTAAGAAGA 941 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 897 GTTTGCTTCTCTTAATCTCAATCTTAGCTCTCTGCTTCTACAAACGAAGGTCTAAGAAGA 956 Query 942 AGTCATTACCGTCGTCGTTGCCGGAGGAGAACAAGCTCTTTGATTCATCAACCAAACAAT 1001 |||||| |||||||||| ||||||||||| ||||||||||||||||||| |||||||| Sbjct 957 AGTCATCGTCGTCGTCGTTACCGGAGGAGAATAAGCTCTTTGATTCATCAAACAAACAAT 1016 Query 1002 CTATTCCCACAACAACAACGACTCAATGGTCAATAGATTTATCCAATTCATCAGAAGCTT 1061 ||||| || | |||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1017 CTATT-CC-C-ACAACAACGACTCAATGGTCAACAGATTTATCCAATTCATCAGAAGCTT 1073 Query 1062 TCGGT-TTAAAATCCGCCATAGAATCTCTAACACTATACAGATTCAACGATCTTCAATCA 1120 | ||| || |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1074 TTGGTCTT-AAATCCGCCATAGAATCTCTAACACTATACAGATTCAACGATCTTCAATCC 1132 Query 1121 GCTACTTCGAATTTCAGCGACGAAAACAGAATCAAAGGCTCTGTTTATCGCGCGACAATC 1180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1133 GCTACTTCGAATTTCAGCGACGAAAACAGAATCAAAGGCTCTGTTTATCGCGCGACGATC 1192 Query 1181 AACGGCGACGATGCCGCTGTGAAAGTGATCAAAGGAGATGTTTCTTCCTCTGAGATCAAT 1240 ||||| || ||||| || |||||||||||||||||||||||||||||||| |||||||| Sbjct 1193 AACGGAGATGATGCGGCGGTGAAAGTGATCAAAGGAGATGTTTCTTCCTCCGAGATCAAC 1252 Query 1241 CTTTTGAAGAAGCTAAATCATTCTAATATCATCCGTCTCTCAGGTTTCTGTATCCGTGAA 1300 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| Sbjct 1253 CTTTTGAAGAAGCTAAATCATTCTAATATCATCCGTCTCTCCGGTTTCTGTATCCGCGAA 1312 Query 1301 GGAACATCGTACCTCGTCTTCGAGTATTCAGAGAATGGATCGATCAGTGATTGGCTTCAC 1360 ||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1313 GGAACCTCGTACCTTGTCTTCGAGTATTCGGAGAATGGATCGATCAGTGATTGGCTTCAC 1372 Query 1361 TCGTCGGGCAAGAAGAGTTTGACATGGAAACAGAGAGTTGAAATAGCAAGGGATGTGGCA 1420 ||||||| |||||| | | |||||||||||||||||||||||||||| |||||||| ||| Sbjct 1373 TCGTCGGACAAGAAAACTCTGACATGGAAACAGAGAGTTGAAATAGCTAGGGATGTAGCA 1432 Query 1421 GAGGCGTTAGATTATCTCCATAACTATATAACTCCACCTCATATTCATAAGAACTTGGAA 1480 ||||| ||||| ||||| |||||||||||||||||||||||||| || |||||||||||| Sbjct 1433 GAGGCATTAGACTATCTTCATAACTATATAACTCCACCTCATATCCACAAGAACTTGGAA 1492 Query 1481 TCAACAAACATACTTCTGGATTCTAATTTCAGAGCCAAGATTGCGAATTTCGGTGTTGCG 1540 ||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||| Sbjct 1493 TCAACCAACATACTTCTTGATTCTAATTTCAGAGCCAAGATTGCGAATTTCGGGGTTGCG 1552 Query 1541 AGGATTCTTGATGAAGGTGATCTTGATCTTCAGTTAACAAGACATGTTGAAGGAACACAA 1600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1553 AGGATTCTTGATGAAGGTGATCTTGATCTTCAGTTAACAAGACATGTTGAAGGAACACAA 1612 Query 1601 GGCTACTTAGCTCCAGAGTATGTGGAGAATGGAGTCATTACTTCGAAACTAGACGTGTTT 1660 |||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||| Sbjct 1613 GGCTACTTAGCTCCAGAGTATGTGGAGAATGGAGTCATAACTCCGAAGCTAGACGTGTTT 1672 Query 1661 GCTTTTGGAGTTGCGGTTCTTGAGCTTCTTTCGGGGAGAGAAGCAGTAACGATACATaag 1720 ||||||||||||| |||||||||||||||||| |||||||||||||| |||||||||||| Sbjct 1673 GCTTTTGGAGTTGTGGTTCTTGAGCTTCTTTCAGGGAGAGAAGCAGTGACGATACATAAG 1732 Query 1721 aagaagga-a-gga-ga--a-gaagaagTGGAGATGTTGTGTAAAGTGATAAACAGTGTG 1774 |||||||| | ||| || | |||||||||||| ||||||||||||||||||||| |||| Sbjct 1733 AAGAAGGAGAAGGAAGAGGAAGAAGAAGTGGAGGTGTTGTGTAAAGTGATAAACAATGTG 1792 Query 1775 CTTGGAGGAGAGAATGTGAGAGAGAAGTTAAAAGAGTTTATGGATCCATCTCTAGGGAAT 1834 ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| Sbjct 1793 CTTGGAGGAGAGAATGTGAGAGAGAAGCTAAAAGAGTTCATGGATCCATCTCTAGGGAAT 1852 Query 1835 GAGTATCCGTTGGAGCTGGCTTACACCATGGCTCAGCTTGCTAAGAGCTGTGTCGCAACT 1894 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1853 GAGTATCCGTTGGAGCTGGCTTACACCATGGCTCAGCTTGCCAAGAGCTGTGTCGCAACT 1912 Query 1895 GATCTTAACTCGCGTCCATCTGTCACTCAGGTTCTAACCACGCTCTCAATGATCGTCTCC 1954 |||||||||||||||||||||||||| ||||||||||||||||| || ||||| |||||| Sbjct 1913 GATCTTAACTCGCGTCCATCTGTCACGCAGGTTCTAACCACGCTTTCGATGATAGTCTCC 1972 Query 1955 TCCTCCATCGATTGGGAGCCTTCTGATGACCTTCTTCGTTCCGGCTCTCTTGGCAACTAG 2014 ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct 1973 TCCTCCATCGATTGGGAGCCTTCTGATGACCTTCTTCGTTCGGGCTCACTTGGCAACTAG 2032 Query 2015 TTCAGttttttttttCT-ATTGGTAGTCAATAACAAGTATTTAGACTTTA-GATAAGGAC 2072 || |||||||||||||| ||||||||||||||| ||||||||| |||| ||||||||| Sbjct 2033 TTTAGTTTTTTTTTTCTTATTGGTAGTCAATAA---GTATTTAGA-TTTAAGATAAGGAC 2088 Query 2073 CATACGGCTAAAAAGTTGAGATCTAATAAGTACCCCACTGTGAAACATAGTAATAAGAAC 2132 |||| |||||||||||||||||| |||||||||| |||||||||||| |||||||||||| Sbjct 2089 CATAAGGCTAAAAAGTTGAGATCAAATAAGTACCACACTGTGAAACAAAGTAATAAGAAC 2148 Query 2133 ATATCATAGAGAAACTTTATTTAGATTTTGACATGTTGCTTCAGTAGTCTTTTGTA 2188 |||||||||||||||||||||||||| ||| |||||| ||||||||||||||||| Sbjct 2149 ATATCATAGAGAAACTTTATTTAGATCTTGGCATGTTATTTCAGTAGTCTTTTGTA 2204 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 84293712185 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5