BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G33580.1
Length=2239
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482304 jgi|Araly1|482304|fgenesh2_kg.4__1364__AT2G33580.1 3131 0.0
> Ahg482304 jgi|Araly1|482304|fgenesh2_kg.4__1364__AT2G33580.1
Length=2204
Score = 3131 bits (1695), Expect = 0.0
Identities = 2050/2216 (93%), Gaps = 46/2216 (2%)
Strand=Plus/Plus
Query 7 AACACCACAAAACATGGCTGCGTGTACACTCCACGCGCTCTCAG--T-CACCTTATTCCT 63
|||||||||||||||||||||| |||||||||||||||| |||| | |||||| |||||
Sbjct 1 AACACCACAAAACATGGCTGCGCGTACACTCCACGCGCTGTCAGTCTCCACCTTGTTCCT 60
Query 64 CCT--T-CTCTTCTTTGCCGTGTCACCGGCGAAAGCTCAGCAACCGTACGTCAACAACCA 120
||| | |||||||| |||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 61 CCTCCTCCTCTTCTTCGCCGCATCACCAGCGAAAGCTCAGCAACCGTACGTCAACAACCA 120
Query 121 CCAGCTCGCCTGCGAGGTCCGTG-TCTACGACAACATAACCAACGGATTCACATGTAACG 179
||||||||||||||||||||| | | | ||||||||||||||||||||||||||||||||
Sbjct 121 CCAGCTCGCCTGCGAGGTCCGCGAT-TTCGACAACATAACCAACGGATTCACATGTAACG 179
Query 180 GCCC-ACCTTCTTGCCGCTCATACCTCACTTTCTGGTCTCAACCACCGTACAACACGGCG 238
|||| ||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 180 GCCCAACC-TCTTGCCGCTCTTACCTCACTTTCTATTCTCAACCACCGTACAACACGGCG 238
Query 239 GACTCAATCGCCAAACTCCTCAACGTCTCCGCCGCAGAGATCCAATCAATCAACAACCTC 298
|||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||
Sbjct 239 GACTCAATCGCCAAACTCCTCAACGTTTCTGCCGCAGAGATCCAATCAATCAACAAACTT 298
Query 299 CCCACAGCCACCACCAGAATCCCAACCCGTGAATTAGTCGTGATCCCAGCTAACTGCTCC 358
||||| | |||||||||||||| |||||||| || ||||||||||||||||||||||||
Sbjct 299 CCCACCGTCACCACCAGAATCCGTACCCGTGACTTGGTCGTGATCCCAGCTAACTGCTCC 358
Query 359 TG---------CTCCTCCTCCAGCGGAGGATTTTACCAACACAACGCCACTTACAATCTC 409
|| |||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 359 TGCTCCTCCTCCTCCTCCTCCTCCGGAGGATTTTACCAGCACAACGCCACTTACAATCTC 418
Query 410 TCCGGTAACAGAGGAGAT-GAAACCTATTTCTCAGTGGCTAACGATACTTACCAAGCTTT 468
||||| |||||||||| | || || |||||||| ||||||||||||||||||||||||||
Sbjct 419 TCCGGCAACAGAGGAG-TAGAGACGTATTTCTCGGTGGCTAACGATACTTACCAAGCTTT 477
Query 469 ATCCACGTGTCAAGCCATGATGTCACAAAACCGTTACGGCGAGAGACAACTAACCCCCGG 528
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 478 ATCCACGTGTCAAGCCATGATGTCACAAAACCGTTACGGCGAGAAAGAACTAACCCCCGG 537
Query 529 CTTAAACCTCCTTGTTCCTCTCCGATGTGCTTGTCCCACCGCCAAACAAACCA-CCGCCG 587
|||||||||||||||||||||||||||||||| |||||||| || |||| || ||||||
Sbjct 538 ATTAAACCTCCTTGTTCCTCTCCGATGTGCTTGCCCCACCGCGAATCAAA-CAGCCGCCG 596
Query 588 GATTTAAATATCTCCTGACTTACTTAGTCGCCATGGGAGATAGTATCTCCGGCATCGCCG 647
|||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 597 GATTTAAATATCTCTTGACTTACTTAGTCGCCAGGGGAGATAGTATCTCCGTCATCGCCG 656
Query 648 AGATGTTCAACAGCACATCCGCCGCCATAACCGAAGGTAACGAGCTTACATC---AGACA 704
| | |||||| |||||| ||||||| |||||||||||||||||||||||||| |||||
Sbjct 657 ATAGGTTCAATAGCACAACCGCCGCTATAACCGAAGGTAACGAGCTTACATCAGAAGACA 716
Query 705 ATATCTTCTTCTTCACACCGGTTCTAGTTCCTCTCACAACTGAACCTACCAAAATCGTTA 764
||||| ||||||||| ||||| || |||||||||| ||||||||||||||||||||| |
Sbjct 717 CTATCTACTTCTTCACGCCGGTGCTTGTTCCTCTCAGAACTGAACCTACCAAAATCGTGA 776
Query 765 TATCTCCGTCGCCTCCTCCTCCACCCGTTGTTGCTACGCCGCCTCAAACGCCAGTTGATC 824
||||||||| |||||||||||||| ||| ||| |||||||||||||||||| || ||||
Sbjct 777 AATCTCCGTCACCTCCTCCTCCACCTGTTATTGTTACGCCGCCTCAAACGCCGGTGGATC 836
Query 825 CTCCGGGA---TCTTCTTCTTCTCACAAATGGATCTACATCGGAATTGGAATCGGAGCTG 881
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 837 CTCCGGGATCTTCTTCTTCTTCTCACAAATGGATTTACATCGGAATTGGAATCGGAGCTG 896
Query 882 GTTTGCTTCTCTTACTCTCAATCTTAGCTCTCTGCTTCTACAAACGAAGGTCTAAGAAGA 941
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 GTTTGCTTCTCTTAATCTCAATCTTAGCTCTCTGCTTCTACAAACGAAGGTCTAAGAAGA 956
Query 942 AGTCATTACCGTCGTCGTTGCCGGAGGAGAACAAGCTCTTTGATTCATCAACCAAACAAT 1001
|||||| |||||||||| ||||||||||| ||||||||||||||||||| ||||||||
Sbjct 957 AGTCATCGTCGTCGTCGTTACCGGAGGAGAATAAGCTCTTTGATTCATCAAACAAACAAT 1016
Query 1002 CTATTCCCACAACAACAACGACTCAATGGTCAATAGATTTATCCAATTCATCAGAAGCTT 1061
||||| || | |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1017 CTATT-CC-C-ACAACAACGACTCAATGGTCAACAGATTTATCCAATTCATCAGAAGCTT 1073
Query 1062 TCGGT-TTAAAATCCGCCATAGAATCTCTAACACTATACAGATTCAACGATCTTCAATCA 1120
| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 TTGGTCTT-AAATCCGCCATAGAATCTCTAACACTATACAGATTCAACGATCTTCAATCC 1132
Query 1121 GCTACTTCGAATTTCAGCGACGAAAACAGAATCAAAGGCTCTGTTTATCGCGCGACAATC 1180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1133 GCTACTTCGAATTTCAGCGACGAAAACAGAATCAAAGGCTCTGTTTATCGCGCGACGATC 1192
Query 1181 AACGGCGACGATGCCGCTGTGAAAGTGATCAAAGGAGATGTTTCTTCCTCTGAGATCAAT 1240
||||| || ||||| || |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1193 AACGGAGATGATGCGGCGGTGAAAGTGATCAAAGGAGATGTTTCTTCCTCCGAGATCAAC 1252
Query 1241 CTTTTGAAGAAGCTAAATCATTCTAATATCATCCGTCTCTCAGGTTTCTGTATCCGTGAA 1300
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1253 CTTTTGAAGAAGCTAAATCATTCTAATATCATCCGTCTCTCCGGTTTCTGTATCCGCGAA 1312
Query 1301 GGAACATCGTACCTCGTCTTCGAGTATTCAGAGAATGGATCGATCAGTGATTGGCTTCAC 1360
||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1313 GGAACCTCGTACCTTGTCTTCGAGTATTCGGAGAATGGATCGATCAGTGATTGGCTTCAC 1372
Query 1361 TCGTCGGGCAAGAAGAGTTTGACATGGAAACAGAGAGTTGAAATAGCAAGGGATGTGGCA 1420
||||||| |||||| | | |||||||||||||||||||||||||||| |||||||| |||
Sbjct 1373 TCGTCGGACAAGAAAACTCTGACATGGAAACAGAGAGTTGAAATAGCTAGGGATGTAGCA 1432
Query 1421 GAGGCGTTAGATTATCTCCATAACTATATAACTCCACCTCATATTCATAAGAACTTGGAA 1480
||||| ||||| ||||| |||||||||||||||||||||||||| || ||||||||||||
Sbjct 1433 GAGGCATTAGACTATCTTCATAACTATATAACTCCACCTCATATCCACAAGAACTTGGAA 1492
Query 1481 TCAACAAACATACTTCTGGATTCTAATTTCAGAGCCAAGATTGCGAATTTCGGTGTTGCG 1540
||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1493 TCAACCAACATACTTCTTGATTCTAATTTCAGAGCCAAGATTGCGAATTTCGGGGTTGCG 1552
Query 1541 AGGATTCTTGATGAAGGTGATCTTGATCTTCAGTTAACAAGACATGTTGAAGGAACACAA 1600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1553 AGGATTCTTGATGAAGGTGATCTTGATCTTCAGTTAACAAGACATGTTGAAGGAACACAA 1612
Query 1601 GGCTACTTAGCTCCAGAGTATGTGGAGAATGGAGTCATTACTTCGAAACTAGACGTGTTT 1660
|||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||
Sbjct 1613 GGCTACTTAGCTCCAGAGTATGTGGAGAATGGAGTCATAACTCCGAAGCTAGACGTGTTT 1672
Query 1661 GCTTTTGGAGTTGCGGTTCTTGAGCTTCTTTCGGGGAGAGAAGCAGTAACGATACATaag 1720
||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1673 GCTTTTGGAGTTGTGGTTCTTGAGCTTCTTTCAGGGAGAGAAGCAGTGACGATACATAAG 1732
Query 1721 aagaagga-a-gga-ga--a-gaagaagTGGAGATGTTGTGTAAAGTGATAAACAGTGTG 1774
|||||||| | ||| || | |||||||||||| ||||||||||||||||||||| ||||
Sbjct 1733 AAGAAGGAGAAGGAAGAGGAAGAAGAAGTGGAGGTGTTGTGTAAAGTGATAAACAATGTG 1792
Query 1775 CTTGGAGGAGAGAATGTGAGAGAGAAGTTAAAAGAGTTTATGGATCCATCTCTAGGGAAT 1834
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 1793 CTTGGAGGAGAGAATGTGAGAGAGAAGCTAAAAGAGTTCATGGATCCATCTCTAGGGAAT 1852
Query 1835 GAGTATCCGTTGGAGCTGGCTTACACCATGGCTCAGCTTGCTAAGAGCTGTGTCGCAACT 1894
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1853 GAGTATCCGTTGGAGCTGGCTTACACCATGGCTCAGCTTGCCAAGAGCTGTGTCGCAACT 1912
Query 1895 GATCTTAACTCGCGTCCATCTGTCACTCAGGTTCTAACCACGCTCTCAATGATCGTCTCC 1954
|||||||||||||||||||||||||| ||||||||||||||||| || ||||| ||||||
Sbjct 1913 GATCTTAACTCGCGTCCATCTGTCACGCAGGTTCTAACCACGCTTTCGATGATAGTCTCC 1972
Query 1955 TCCTCCATCGATTGGGAGCCTTCTGATGACCTTCTTCGTTCCGGCTCTCTTGGCAACTAG 2014
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1973 TCCTCCATCGATTGGGAGCCTTCTGATGACCTTCTTCGTTCGGGCTCACTTGGCAACTAG 2032
Query 2015 TTCAGttttttttttCT-ATTGGTAGTCAATAACAAGTATTTAGACTTTA-GATAAGGAC 2072
|| |||||||||||||| ||||||||||||||| ||||||||| |||| |||||||||
Sbjct 2033 TTTAGTTTTTTTTTTCTTATTGGTAGTCAATAA---GTATTTAGA-TTTAAGATAAGGAC 2088
Query 2073 CATACGGCTAAAAAGTTGAGATCTAATAAGTACCCCACTGTGAAACATAGTAATAAGAAC 2132
|||| |||||||||||||||||| |||||||||| |||||||||||| ||||||||||||
Sbjct 2089 CATAAGGCTAAAAAGTTGAGATCAAATAAGTACCACACTGTGAAACAAAGTAATAAGAAC 2148
Query 2133 ATATCATAGAGAAACTTTATTTAGATTTTGACATGTTGCTTCAGTAGTCTTTTGTA 2188
|||||||||||||||||||||||||| ||| |||||| |||||||||||||||||
Sbjct 2149 ATATCATAGAGAAACTTTATTTAGATCTTGGCATGTTATTTCAGTAGTCTTTTGTA 2204
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84293712185
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5