BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G33585.1

Length=785
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg321088 jgi|Araly1|321088|fgenesh1_pm.C_scaffold_4001145           558    2e-158


> Ahg321088 jgi|Araly1|321088|fgenesh1_pm.C_scaffold_4001145
Length=420

 Score =  558 bits (302),  Expect = 2e-158
 Identities = 391/432 (91%), Gaps = 13/432 (3%)
 Strand=Plus/Plus

Query  152  ATGCGAATCAAAATCAAATCGCCTGCTTTTACTTTTCTTGCAATTTCAGTTCCAAATCGA  211
            ||||||||| | ||||||||| ||||||||||  || || |  ||||| ||||| |||||
Sbjct  1    ATGCGAATC-ACATCAAATCG-CTGCTTTTAC--TT-TT-C--TTTCAATTCCATATCGA  52

Query  212  ATCATCATCAAAGTCAAGCAATTGTCAGAGAAGAGATCCAGAAGAACCTTAGACCAGTTC  271
            ||||||||||||||||||||||  |||||||||||||||||||||||| ||||| || | 
Sbjct  53   ATCATCATCAAAGTCAAGCAATCCTCAGAGAAGAGATCCAGAAGAACCCTAGACAAG-TA  111

Query  272  GTATAGTTGGGCATC-AATCAATGGCTAGCAGCTGGAGAAGATCAATTGGAAACGTGAGA  330
            |  || ||| ||||| ||||||||||||| |||||||||||||||||||| |||||||||
Sbjct  112  G--TA-TTGAGCATCAAATCAATGGCTAGTAGCTGGAGAAGATCAATTGGGAACGTGAGA  168

Query  331  TCTTTCATCGGTAATTCCATGGGAGGTCTTAGAGGTGGTCAGAGTGCCGCTTCTTGGGTC  390
            ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  169  TCTTTCATCGGAAATTCCATGGGAGGTCTTAGAGGAGGTCAGAGTGCCGCTTCTTGGGTC  228

Query  391  GTCGCCGGAACTATTGCTTACTTTCTCTGGATTAAGCCAGAACAAGATCTTAAAAAGGAA  450
            ||||||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||
Sbjct  229  GTCGCCGGAACTATTGCCTACTTTCTCTGGATTAAGCCAGCTCAAGATCTTAAAAAGGAA  288

Query  451  CAAGAGGCTAGGGCAGCTCTTGCAATGGCTGATACTAATCAATACGTTGAGAAGAGGAAA  510
            ||||||||||| ||||||||||||||| ||||| | || |||||||||||||||||||||
Sbjct  289  CAAGAGGCTAGAGCAGCTCTTGCAATGTCTGATCCAAACCAATACGTTGAGAAGAGGAAA  348

Query  511  CCAATCGCTGACCCTCAGGTTACTGGTTTGATATATGGAAACAAGAACGGAACTGATAAG  570
            ||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||| 
Sbjct  349  CCAATCGCTGATCCTCAGGTTACTGGTTTGATTTATGGAAACAAGAACAGAACTGATAAA  408

Query  571  TCAGAAGATTGA  582
             || | ||||||
Sbjct  409  CCACAGGATTGA  420



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28973416920


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5