BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G33590.1
Length=1557
Score E
Sequences producing significant alignments: (Bits) Value
Ahg901179 jgi|Araly1|901179|Al_scaffold_0004_1829 1458 0.0
> Ahg901179 jgi|Araly1|901179|Al_scaffold_0004_1829
Length=966
Score = 1458 bits (789), Expect = 0.0
Identities = 911/970 (94%), Gaps = 8/970 (1%)
Strand=Plus/Plus
Query 355 ATGGCTGATGTTCACAAAGGAAAGGTTTGTGTAACCGGTGCCGGAGGGTTTTTGGGTTCG 414
||||| | |||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1 ATGGCGGTTGTTCACAAAGGAAAGGTCTGTGTAACCGGTGCTGGAGGGTTTTTGGGTTCG 60
Query 415 TGGGTCGTCGATCTTCTTCTCTCTAAGGATTACTTCGTCCATG-G-CACTGTCAGAGACC 472
||||||||||||||||||||||||| ||||||||||||||| | | | ||| | | | |
Sbjct 61 TGGGTCGTCGATCTTCTTCTCTCTAGGGATTACTTCGTCCA-GAGACCCTGCCTGTCA-C 118
Query 473 CTGATAATGAAAAGTATGCTCATTTGAAGAAGCTCGAGAAAGCTGGTGACAAACTCAAGC 532
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 119 CTGATAATGAAAAATATGCTCATTTGAAGAAGCTCGAAAAAGCTGGTGACAAACTCAAGC 178
Query 533 TCTTCAAGGCTGATTTGTTGGACTACGGCTCTCTTCAATCTGCTATTGCAGGTTGCAGCG 592
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 179 TCTTCAAGGCTGATTTGTTGGACTACGGCTCTCTTCAATCTGCTATTGCAGGCTGTAGCG 238
Query 593 GAGTCTTCCATGTCGCTTGCCCGGTTCCACCAGCTTCAGTCCCTAATCCTGAGGTAGAAT 652
| ||||||||||| || || ||||||||||||||||||||||| ||||||||||||||||
Sbjct 239 GCGTCTTCCATGTTGCATGTCCGGTTCCACCAGCTTCAGTCCCAAATCCTGAGGTAGAAT 298
Query 653 TGATCGCACCTGCTGTGGATGGCACGCTGAATGTGCTTAAGGCATGCATTGAAGCGAATG 712
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 299 TGATCGCACCTGCTGTGGATGGCACGCTGAATGTGCTTAAGGCATGCGTTGAAGCGAATG 358
Query 713 TTAAGCGTGTTGTGTATGTTTCCTCTGTAGCTGCGGCTTT-CATGAACCCTATGTGGTCA 771
||||||||||||||||||||||||||||| |||| |||| |||||||||| ||||||||
Sbjct 359 TTAAGCGTGTTGTGTATGTTTCCTCTGTATCTGCA-CTTTTCATGAACCCTGTGTGGTCA 417
Query 772 AAGAATCAAGTATTAGATGAGGCATGTTGGTCTGACCAGGAATACTGCAAGAAAACTGAG 831
||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||||
Sbjct 418 AAGAATCAAGTATTAGATGAGACATGTTGGTCTGATCAGGAATATTGCAAGAAAACTGAG 477
Query 832 AATTGGTATTGTCTGGCAAAGACACGAGCAGAGAGTGAAGCTTTTGAATTTGCAAAACGA 891
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 AATTGGTATTGTCTAGCAAAGACACGAGCAGAGAGTGAAGCTTTTGAATTTGCAAAACGA 537
Query 892 ACCGGACTTCATCTCGTCAGTGTTTGCCCTACCCTTGTTTTGGGACCTATACTGCAGCAG 951
||||||||| |||| ||||| |||||||||| |||||| |||||||||||||||||||||
Sbjct 538 ACCGGACTTGATCTTGTCAGCGTTTGCCCTAGCCTTGTCTTGGGACCTATACTGCAGCAG 597
Query 952 AACACAGTAAATGCTAGTAGCCTGGTTCTTCTTAAGCTTCTTAAAGAGGGTTTTGAAACA 1011
||||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||
Sbjct 598 CACACAGTAAATGCTAGTAGCCTGGTTCTTCTCAAACTTCTTAAAGAGGGTTTTGAATCA 657
Query 1012 CGTGATAACCAAGAACGTCATTTGGTAGATGTGCGTGATGTAGCTCAAGCTTTACTCTTG 1071
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 658 CGTGATAACCAAGAACGACATTTGGTAGATGTGCGTGATGTGGCTCAAGCTTTACTCTTG 717
Query 1072 GTTTATGAGAAAGCAGAAGCTGAAGGAAGATACATATGTACATCCCACACGGTTAAAGAA 1131
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 718 GTTTATGAGAAAGCAGAAGCTGAAGGAAGATACATATGTACATCCCACACGGTCAAAGAA 777
Query 1132 GAGATTGTGGTTGAGAAGCTGAAGAGTTTTTATCCACATTACAACTACCCAAAGAAATAC 1191
| |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 778 CAAATTGTGGTTGAGAAGCTGAAGAGTCTTTATCCACATTACAACTACCCAAAGAGATAC 837
Query 1192 ATTGATGCGGAAGATAGAGTGAAGGTGAGTTCAGAGAAATTGCAGAAGTTGGGTTGGACT 1251
| || |||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 838 GTCGAAGCGGAAGAAAGAGTGAAGGTGAGTTCAGAGAGATTGCAGAAGTTGGGTTGGACT 897
Query 1252 TACC-GGCCGTTGGAGGAAACACTTGTGGATTCTGTTGAGAGCTACCGGAAAGCTAAGCT 1310
||| ||| |||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 898 TACAAGGC-GTTGGAGGAAACACTTGTGGATTCGGTAGAGAGCTACCGGAAAGCTAAGCT 956
Query 1311 TGTGGACTGA 1320
||||||||||
Sbjct 957 TGTGGACTGA 966
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58316165095
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5