BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G33610.1
Length=1621
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933948 jgi|Araly1|933948|scaffold_401936.1 2189 0.0
> Ahg933948 jgi|Araly1|933948|scaffold_401936.1
Length=1449
Score = 2189 bits (1185), Expect = 0.0
Identities = 1365/1453 (94%), Gaps = 8/1453 (1%)
Strand=Plus/Plus
Query 33 GTTAGTT-AA-ACAGAGAGTCATGGCCATGAAAGCTCCCGATCCCGGCGGATCTGGGGAA 90
||||||| || | |||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 1 GTTAGTTGAACAGAGAGAGTCATGGCCATGAAAGCTCTCGATTCCGGCGGATCTGGGGAA 60
Query 91 ATTCTCCCGAGCACTCCCTCTCTTTCCGAAACTACGTCTGGAGGCGCCGCAGCAGCTTCT 150
||||| || | |||| |||||||||||||||||||||||||| | | | ||||||||
Sbjct 61 ATTCTTCCAATTACTCACTCTCTTTCCGAAACTACGTCTGGAGTTG-C-C-GCAGCTTCG 117
Query 151 AAGTCGGCTCAATTGCCGTCTTCTTCTTCCGATATCGATAATATTC-ACGTACCTAGCTA 209
||||| ||||| |||||||||||||||||||||||| | || || |||||||||||||
Sbjct 118 CAGTCGCCTCAACCGCCGTCTTCTTCTTCCGATATCGACACTA-TCTACGTACCTAGCTA 176
Query 210 CTCCAGTTGGTTTTCATGGACCGACATTAACGATTGCGAGGTCCGGTCACTGCCGGAATT 269
|||| |||||||||| ||||| | ||| ||||||||||||||||| ||||||||||||||
Sbjct 177 CTCCCGTTGGTTTTCGTGGACGGGCATCAACGATTGCGAGGTCCGTTCACTGCCGGAATT 236
Query 270 TTTCGATTCGAGATCTTCATCCAAAAACCCTAAGTTTTATCTCTACTTGAGGAACTCGAT 329
|||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 237 CTTCGATTCGAGATCTTCATCCAAAAACCCTAAGTTTTACCTCTACTTGAGGAATTCGAT 296
Query 330 TATTAAGCAGTACAGAGACGACCATCCTCGGAAGATTAGTTTCACTGACGTTCGGAGAAC 389
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 297 TATTAAGCAGTACAGAGACGACCATCCTCGGAAGATTAGCTTCACTGACGTTCGGAGAAC 356
Query 390 TCTCGTCAGTGATGTTGTCTCTATTCGTCGCGTCTTTGATTTCCTCGATTCATGGGGACT 449
||||||||||||||||||||||||||||||||| ||||||||||| || |||||||| ||
Sbjct 357 TCTCGTCAGTGATGTTGTCTCTATTCGTCGCGTATTTGATTTCCTAGACTCATGGGGGCT 416
Query 450 TATCAACTATAATAGCTCCGCCTCTGCTAAGCCGCTCAAGTGGGAAGAAAAAGAGGCCGG 509
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 417 TATCAACTATACTAGCTCCGCCTCTGCTAAGCCGCTCAAGTGGGACGAAAAAGAGGCCGG 476
Query 510 AAAATCCGCCGGAGATGCTGCTTCTGAGCCAGCCACAACTGTCAAAGAAACTGCCAAGAG 569
|||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 477 AAAATCCGTCGGAGATGCTGCTTCTGAGCCATCCACTACTGTCAAAGAAACTGCCAAGAG 536
Query 570 AAACTGCAATGGCTGCAAAGCAATTTGCAGCATAGCTTGTTTCGCCTGTGATAAGTATGA 629
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 537 AATCTGCAATGGCTGCAAATCAATTTGCAGCATAGCTTGTTTCGCCTGTGATAAGTATGA 596
Query 630 CTTGACATTGTGTGCGAGGTGCTATGTTCGTAGTAATTATCGTGTTGGTATTAACTCCTC 689
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 597 CTTGACATTGTGTGCGAGGTGCTATGTCCGTAGTAACTATCGTGTTGGTATTAACTCCTC 656
Query 690 GGAGTTTAAACGAGTTGAGATTAGTGAGGAGTCAAAGCCAGAGTGGTCTGATAAGGAAAT 749
||||||||| ||||||||||||||||||||||||||| | |||||||||| ||||||||
Sbjct 657 GGAGTTTAAGCGAGTTGAGATTAGTGAGGAGTCAAAGATACAGTGGTCTGAAAAGGAAAT 716
Query 750 TCTGCTGCTGCTGGAAGCTGTTATGCACTATGGAGATGATTGGAAGAAGGTTGCATCGCA 809
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 717 TCTGCTTCTGCTGGAAGCTGTTATGCACTATGGAGATGATTGGAAGAAGGTTGCACCGCA 776
Query 810 TGTTATTGGTAGAACGGAGAAGGATTGTGTTTCTCAGTTTGTCAAGCTTCCGTTTGGGGA 869
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 TGTTACTGGTAGAACCGAGAAGGATTGTGTTTCTCAGTTTGTCAAGCTTCCGTTTGGGGA 836
Query 870 ACAGTTTGTAAAAGAGTCTGACTCTGAGGATGGTTTAGAGATGTTTGATCAGATCAAGGA 929
||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 837 ACAGTTTGTAAAAGAGTCTGACTTTGAGGATGGTTTAGAGGCGTTTGATCAGATCAAGGG 896
Query 930 CTCTGATATTCCTGAATCTGAAGGAATAGATAAAGACGGTTCTTCTCCCAACAAGCGGAT 989
||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 897 CTCTGCTATTCCTGAATCTGAAGGAATAGATAAAGACGGTTCTTCTCCCAATAAGCGGAT 956
Query 990 CAAATTAACACCTCTTGCAGATGCAAGCAACCCAATAATGGCTCAGGCTGCTTTTCTTTC 1049
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 GAAATTAACGCCTCTTGCAGATGCAAGCAACCCAATAATGGCTCAGGCTGCTTTTCTTTC 1016
Query 1050 AGCTTTGGCTGGCACAAATGTTGCAGAAGCAGCAGCTCGAGCGGCAGTGAGAGCTTTATC 1109
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1017 AGCTTTGGCTGGCACAAATGTTGCAGAAGCAGCAGCTCGAGCGGCAGTGACAGCTTTATC 1076
Query 1110 TGATGTAGACTACGAGGCTGACAAAAACGCCAGTAGAGACCCAAATCGACAAGATGCCAA 1169
||||||||||||||| |||||||||||||||||| ||||| ||||||||||||| |||||
Sbjct 1077 TGATGTAGACTACGACGCTGACAAAAACGCCAGTGGAGACTCAAATCGACAAGAGGCCAA 1136
Query 1170 TGCTGCATCGAGTGGTGAAACCACTAGAAACGAATCTGAAAGAGCTTGGGCAGATGCAAA 1229
|| ||| |||||||||||||||| ||||||||| ||||||||||||||||||||||| ||
Sbjct 1137 TGGTGCTTCGAGTGGTGAAACCATTAGAAACGACTCTGAAAGAGCTTGGGCAGATGCGAA 1196
Query 1230 GTCTTTAATTGAGAAGGAAGAGCATGAGGTAGAAGGAGCAATCAAAGAGACTGTTGAAGT 1289
|||| | || |||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 1197 GTCTCTGATCGAGAAGGAAGAGCAGGAGGTAGAAGTAGCAATCAAAGAGACTGTTGAAGT 1256
Query 1290 TGAGATGAAGAAGATCCGAGATAGGATTGTTCATTTCGAGAAATTGGATTTGGAAATGGA 1349
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1257 TGAGATGAAGAAGATCCGAGATAGGATTGTACATTTCGAGAAATTGGATTTGGAAATGGA 1316
Query 1350 GAGAAGCCGGAAACAATTGGAGGAGGTGAGGAATCTGCTTTTCGTTGATCAATTAAACAT 1409
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 1317 GAGAAGCCGGAAACAATTGGAGGAGATGAAGAATCTGCTTTTCGTTGATCAATTAAACAT 1376
Query 1410 TTTCTTCCACACCAGAAAAGCCCGGAAAACTGAAGATAGAATAGAGTGTTAGAACGCACT 1469
|||||||||||| ||||||||||||| | ||||||||||| |||||||||||||| ||||
Sbjct 1377 TTTCTTCCACACAAGAAAAGCCCGGACATCTGAAGATAGAGTAGAGTGTTAGAACACACT 1436
Query 1470 TAA-TTTGAAACT 1481
||| |||||||||
Sbjct 1437 TAAATTTGAAACT 1449
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60753940775
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5