BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G33620.1
Length=1629
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482309 jgi|Araly1|482309|fgenesh2_kg.4__1369__AT2G33620.2 1598 0.0
> Ahg482309 jgi|Araly1|482309|fgenesh2_kg.4__1369__AT2G33620.2
Length=1774
Score = 1598 bits (865), Expect = 0.0
Identities = 1071/1164 (92%), Gaps = 39/1164 (3%)
Strand=Plus/Plus
Query 243 GTGAGAAGAAAATGTCAGGATCTGAGACGGGTTTAATGGCGGCGACCAGAGAATCAATGC 302
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 451 GTGAGAAGAAAATGTCAGGATCTGAGACGGGTTTTATGGCGGCGACCAGAGATTCAATGC 510
Query 303 AATTTACAATGGCTCTCCA-C--CAGCAGCAGCAACACAGTCAAGCTCAACCTCAGCAGT 359
||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||
Sbjct 511 AATTTACAATGGCTCTCCACCAGCAGCAGCAGCAACGCAGTCAAGCTCAACCTCAGCAGT 570
Query 360 CTCAGAACAGGCCATTGTCATTCGGTGGAGACGACGGAACTGCTCTTTACAAGCAGCCGA 419
||||||||| || ||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 571 CTCAGAACATGCAATTGTCATTCGGTGGAGACGACGGAGCCGCTCTTTACAAGCAGCCGA 630
Query 420 TGAGATCAGTATCACCACCGCAGCAGTACCAACCCAACTCAGCTGGTGAGAATTCTGTCT 479
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 631 TGAGATCAGCATCACCACCGCAGCAGTACCAACCCAACTCAGCTGGTGAGAATCCTGTCT 690
Query 480 TGAACATGAACTTGCCCGGAGGTGAGTC-TGGAGGCATGACTGGAACTGGAAGTGAGCCA 538
||||||||||| |||||||||||||| | |||| || | | | ||||||||||||||
Sbjct 691 TGAACATGAACATGCCCGGAGGTGAG-CATGGA-GC-CG--T-G-ACTGGAAGTGAGCCT 743
Query 539 GTGAAAAAGAGGAGAGGTAGACCGAGGAAATATGGGCCTGATAGTGGTGAAATGTCACTT 598
||||| ||||||||||||||||| |||||||| || ||||| |||||||||| |||||||
Sbjct 744 GTGAAGAAGAGGAGAGGTAGACCAAGGAAATACGGACCTGACAGTGGTGAAACGTCACTT 803
Query 599 GGTTTGAATCCTGGAGCTCCTTCTTTCACTGTCAGCCAACCTAG-TAGCGGCGGCGATGG 657
|||||| | |||||||||||||||||||||| ||||||||| | ||||||||| | |||
Sbjct 804 GGTTTGGTTTCTGGAGCTCCTTCTTTCACTGTGAGCCAACCT-GTTAGCGGCGGTGGTGG 862
Query 658 AGGAGAGAAG-A-A-GAGAGGAAGACCTCCTGGTTCTTCTAGCAAAAGGCTCAAGCTTCA 714
|||||||||| | | ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 863 AGGAGAGAAGAAGATGAGAGGAAGACCTCCTGGTCCTTCTAGCAAAAGGCTCAAGCTTCA 922
Query 715 AGCTTTAGGCTCGACTGGAATCGGATTTACGCCTCATGTACTTACCGTGCTGGCTGGAGA 774
||| ||||||||||| |||||||||||||||||||| ||||||| |||| || |||||||
Sbjct 923 AGCCTTAGGCTCGACGGGAATCGGATTTACGCCTCACGTACTTAACGTGATGACTGGAGA 982
Query 775 GGATGTATCATCCAAGATAATGGCGTTAACTCATAATGGACCCCGTGCTGTGTGTGTCTT 834
|||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 983 GGATGTATCATCAAAGATAATGGCGTTAGCTCATAATGGACCACGTGCTGTGTGTGTCTT 1042
Query 835 GTCTGCAAATGGAGCCATCTCCAATGTGACTCTCCGCCAGTCTGCCACATCCGGTGGAAC 894
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1043 GTCTGCAAATGGAGCCATCTCCAATGTGACTCTCCGCCAGTCTGGCACATCCGGTGGAAC 1102
Query 895 TGTTACATATGAGGGGAGATTTGAGATTCTGTCTTTATCGGGATCTTTCCATTTGCTGGA 954
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1103 CGTTACATATGAGGGGAGATTTGAGATTCTGTCTTTATCGGGATCGTTCCATTTGCTGGA 1162
Query 955 GAACAATGGTCAAAGAAGCAGGACGGGAGGTCTAAGCGTGTCATTATCAAGTCCGGATGG 1014
|||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1163 GAACGATGGTCAAAGAAGCAGGACGGGTGGTCTAAGCGTGTCCTTATCAAGTCCGGATGG 1222
Query 1015 TAATGTCCTCGGTGGCAGTGTAGCTGGTCTTCTTATAGCAGCATCACCTGTTCAGATTGT 1074
||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1223 TAATGTCCTAGGTGGTAGTGTAGCTGGTCTTCTGATAGCAGCATCACCTGTTCAGATTGT 1282
Query 1075 TGTTGGGAGTTTCTTACCAGACGGAGAAAAAGAACCAAAACAGCATGTGGGACAAATGGG 1134
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1283 TGTTGGGAGTTTCATACCAGACGGAGAAAAAGAACCAAAACAGCATGTGGGACAAATGGG 1342
Query 1135 ACTGTCGTCACCCGTATTACCGCGTGTGGCCCCAACGCAGGTGCTGATGACTCCAAGTAG 1194
||| ||||||||| ||||||||||||||||||||| ||||||||||||||||| || ||
Sbjct 1343 ACTATCGTCACCCACATTACCGCGTGTGGCCCCAACACAGGTGCTGATGACTCCGAGCAG 1402
Query 1195 CCCACAATCTCGAGGCACAATGAGTGAGTCATCTTGTGGAGGAGGACATGGAAGCCCTAT 1254
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1403 CCCGCAATCTCGAGGCACAATGAGTGAGTCATCTTGTGGAGGAGGACATGGAAGCCCTAT 1462
Query 1255 TCATCAGAGCACTGGAGGACCTTACAATAACACCATTAACATGCCCTGGAAGTAGCCAAG 1314
|||||||||||| |||| | | | | | || || ||||||||||||||
Sbjct 1463 TCATCAGAGCAC---AGGA--T--C--T-------T-A-CA-GC--TGGAAGTAGCCAAG 1501
Query 1315 TGATCTGTGTCGGCTTAAAACCAACAACTTCCCGTTATTAGAGTGAT--TTATTTCTACA 1372
||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||| |
Sbjct 1502 TGATCTGGGTCGGCTTAAAACCAACAACTTCCCGTTATTTGAGTGATGATTATTTCTATA 1561
Query 1373 TTTGGTTTAGACTTTCTAGTTCTG 1396
||||||||||||||||||||||||
Sbjct 1562 TTTGGTTTAGACTTTCTAGTTCTG 1585
Score = 335 bits (181), Expect = 7e-91
Identities = 218/235 (93%), Gaps = 5/235 (2%)
Strand=Plus/Plus
Query 1395 TGATGGTTATTTCTACAGTTGGTTTAGACTTTCTAGTTCTGTTCAGACAAAAGGAGTTTG 1454
||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1545 TGATGATTATTTCTATATTTGGTTTAGACTTTCTAGTTCTGTTCAGACAAAAGGAGTTTG 1604
Query 1455 ATAAATTGACCGACCTATTTTGTGTGTTTGAGGTACTTTCAGAACCATAGGTGTTCAGAA 1514
|||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1605 ATAACTTGACC----TATTTTGTGT-TTTGAGGTACTTTCAGAACCATAGGTGTTCAGAA 1659
Query 1515 ATTAGAATGTTCTGTTTAAGGTAGATCTTTTATTTTATGTTGAGGTACTTTCGGAACCAT 1574
|||||||||| ||| || | |||||||||||||||||||||||||||||||| |||||||
Sbjct 1660 ATTAGAATGTCCTGATTCATGTAGATCTTTTATTTTATGTTGAGGTACTTTCAGAACCAT 1719
Query 1575 AAGTTGTTCAGAAATTGGAATATCCTGATTAATGTAGATCTTTTATTTTGTGTTT 1629
|||||||||||||||| ||| |||||| |||||||||||||||||||||||||||
Sbjct 1720 AAGTTGTTCAGAAATTAGAAAATCCTGTTTAATGTAGATCTTTTATTTTGTGTTT 1774
Score = 287 bits (155), Expect = 2e-76
Identities = 219/247 (89%), Gaps = 16/247 (6%)
Strand=Plus/Plus
Query 1 AACCTTAATGCGCGATCCGC-TTT-T-CTAAAGTTTTGTGAGAGAG-A-AGAGATCTaaa 55
||||||||||| ||||||| ||| | ||||| ||||||| ||||| | |||||||| |
Sbjct 14 AACCTTAATGCTTGATCCGCTTTTCTCCTAAATTTTTGTGTGAGAGAAGAGAGATCT--A 71
Query 56 aaaaTCCACAATTTTGTTCAAATCTTGGAGTTAAATGCTGAATTTTAGGCCTTGTTGCTT 115
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 72 AAAATCCACAATTTTGTTCAAATCTTGGAGTTAAATGCTGAATTTTAGGCCTAGTTGCTT 131
Query 116 AGATTTATGGCTTAAAGTTTCAAACTTTTCATTGGATATGGTACAAATCTTGTAGTTAAA 175
|||| |||||||||||||||| |||||||| ||||||||||||||| |||||||||||||
Sbjct 132 AGATGTATGGCTTAAAGTTTCGAACTTTTCCTTGGATATGGTACAA-TCTTGTAGTTAAA 190
Query 176 CACTGAATTGTGTCCCTC--G-T---GGGCGTTGTTGCTTTGATTTATGGCCAAAAGTTT 229
| |||| | ||||||||| | | |||||||||||||| |||||||||| |||||||
Sbjct 191 CGCTGA-T-GTGTCCCTCTTGGTCTTGGGCGTTGTTGCTTAGATTTATGGCTTAAAGTTT 248
Query 230 CAAACTT 236
|||||||
Sbjct 249 CAAACTT 255
Score = 122 bits (66), Expect = 6e-27
Identities = 122/146 (84%), Gaps = 16/146 (11%)
Strand=Plus/Plus
Query 103 GGCCTTGTTGCTTAGATTTATGGCTTAAAGTTTCAAACTTTTCATTGGATATGGTACAAA 162
||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 216 GGCGTTGTTGCTTAGATTTATGGCTTAAAGTTTCAAACTTTTCCTTGGATATGGTACAA- 274
Query 163 TCTTGT--------A-GTT-AAACACTGAATTGTGTCCCTCGTGGGCGT-T-GTTGCTTT 210
|||||| | ||| |||||||||||||| || || ||||||| | |||||||
Sbjct 275 TCTTGTTGTTGCTTAAGTTGAAACACTGAATTGTCTCTCT--TGGGCGTGTAGTTGCTTA 332
Query 211 GATTTATGGCCAAAAGTTTCAAACTT 236
|||||| ||| ||| ||||||| |||
Sbjct 333 GATTTAGGGCTAAA-GTTTCAATCTT 357
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61058662735
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5