BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G33630.1
Length=1620
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933950 jgi|Araly1|933950|scaffold_401938.1 2252 0.0
> Ahg933950 jgi|Araly1|933950|scaffold_401938.1
Length=1488
Score = 2252 bits (1219), Expect = 0.0
Identities = 1398/1485 (94%), Gaps = 9/1485 (1%)
Strand=Plus/Plus
Query 42 AGAGAGAGAAGAAGAAAAATGCATTTGAGTGAGAATGAAGGTGTCGAAGGTAACACCTTC 101
|||||||| || || | |||||||||||||||||||||||| |||||||| |||||||||
Sbjct 10 AGAGAGAG-AG-AG-AGAATGCATTTGAGTGAGAATGAAGGCGTCGAAGGCAACACCTTC 66
Query 102 GTGGTCACTGGAGGTCTTGGCTTCGTCGGTGCAGCTCTCTGCTTAGAGCTCGTTCGTCGT 161
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 67 GTGGTCACTGGAGGTCTTGGCTTCGTCGGTGCCGCTCTCTGTTTAGAGCTCGTTCGTCGT 126
Query 162 GGTGCTCGCCAAGTTCGCTCTTTTGACCTCCGTC-ACTCTTCTCCTTGGTCCGATGATCT 220
|||||||||||||| ||||||||||||||||| | |||||||||||||||||||||| ||
Sbjct 127 GGTGCTCGCCAAGTCCGCTCTTTTGACCTCCG-CAACTCTTCTCCTTGGTCCGATGACCT 185
Query 221 CAAAAACAGTGGCGTTCGCTGCATTCAAGGTGATGTGACTAAGAAACAAGATGTGGATAA 280
|||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||
Sbjct 186 CAAAAACAGTGGCGTTCGCTGCATCCAAGGTGATGTGACGAAGAAAGGAGATGTGGATAA 245
Query 281 CGCTTTAGATGGAGCAGACTGTGTTTTGCATCTTGCTTCTTATGGTATGTCTGGGAAGGA 340
||| |||||||||| |||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 246 GGCTCTAGATGGAGCTGACTGTGTTTTGCATCTTGCTTCTCATGGTATGTCTGGGAAAGA 305
Query 341 GATGCTTCGGTTTGGTCGTTGTGATGAGGTTAACATCAACGGGACTTGTAATGTCTTGGA 400
|||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 306 GATGCTTCAGTTTGGTCGTTGTGACGAGGTTAACATAAACGGGACTTGTAATGTCTTGGA 365
Query 401 AGCTGCGTTTAAACATGAGATTACAAGAATTGTGTATGTTAGCACTTACAATGTTGTGTT 460
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 366 AGCTGCGTTTAAACATGAGATTACAAGAATTGTGTATGTCAGCACTTATAATGTTGTGTT 425
Query 461 TGGTGGTAAAGAGATTCTCAATGGTAATGAAGGTTTGCCTTATTTCCCTCTTGATGATCA 520
||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||| ||
Sbjct 426 TGGTGGTAAGGAGATTCTGAATGGTAATGAAGGTTTGCCGTATTTCCCTCTTGATGACCA 485
Query 521 TGTTGATGCATATAGTCGAACTAAATCGATTGCAGAACAGTTGGTTCTCAAGAGTAATGG 580
||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 486 TGTTGATGCCGATGGTCGAAGTAAATCGATTGCAGAACAGTTGGTTCTCAAGAGTAATGG 545
Query 581 TCGA-CCTTTTAAGAATGGAGGCAAACGGATGTATACATGTGCGATTCGTCCAGCGGCTA 639
|| |||||||||||||| |||||||||||||| |||||||| ||||||||||||||||
Sbjct 546 -CGGGCCTTTTAAGAATGGGGGCAAACGGATGTACACATGTGCAATTCGTCCAGCGGCTA 604
Query 640 TATATGGACCTGGCGAAGATAGGCATCTTCCTAGGATTGTTACTCTAACAAAGTTGGGTT 699
||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||
Sbjct 605 TATATGGACCTGGCGAAGATAGGCATCTTCCTAGGATAGTTAATCTAGCAAAGTTGGGTT 664
Query 700 TGGCTCTCTTCAAGATCGGTGAACCGAGTGTCAAATCAGACTGGATTTATGTCGAAAACC 759
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 665 TGGCTCTCTTCAAGATCGGTGAACCGAGTGTCAAAACAGACTGGATTTATGTCGAAAACC 724
Query 760 TTGTCCTAGCAATCATCTTGGCAAGTATGGGACTCTTGGATGACATTCCTGGCAGAGAAG 819
||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||
Sbjct 725 TTGTCCTAGCAATCATCCTGGCAAGCATGGGACTCTTGGACGACATTCCTGGCAGAGAAG 784
Query 820 GACAACCTGTTGCTGCTGGTCAACCATATTTTGTCTCTGACGGTTACCCGGTGAATACCT 879
|||| || || |||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 785 GACATCCCGTCGCTGCTGGTCAACCATATTTTGTCTCTGACGGTTCCCCAGTGAATACCT 844
Query 880 TTGAGTTTCTGCGTCCTTTACTAAAAAGTTTAGACTATGACCTGCCCAAGTGTACAATCT 939
|||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 845 TTGAGTTTCTACGTCCCTTACTAAAAAGTTTAGACTATGACCTGCCCAAGTTTACAATCT 904
Query 940 CTGTACCTTTTGCGCTGTCCTTGGGTAAGATCTTCCAAGGTTTCTACACTGTGCTATATC 999
||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 905 CTGTACCTTTTGCACTGTCCTTGGGTAAGATCTTCCAAGGTGTCTACACTTTGCTATATC 964
Query 1000 CATGGCTATCAAAGAGCTGGTTACCACAGCCCCTTGTTCTTCCTGCTGAAGTCTACAAGG 1059
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 965 CATGGCTATCAAACAGCTGGTTACCACAGCCCCTTGTTCTTCCTGCTGAAGTCTACAAGG 1024
Query 1060 TCGGTGTTACCCATTATTTCTCATATCTTAAAGCCAAGGAGGAGCTTGGATATGTTCCAT 1119
| ||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1025 TTGGTGTCACCCATTATTTCTCATATCTCAAAGCCAAGGAAGAGCTTGGATATGTTCCAT 1084
Query 1120 TCAAGAGCTCCAAGGAAGGTATGGCTGCAACTATCTCATACTGGCAGGAAAGGAAGCGGA 1179
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||
Sbjct 1085 TCAAGAGCTCCAAGGAAGGAATGGCTGCAACTATCTCATACTGGCAGGAAAGGAAACAGA 1144
Query 1180 GATCTTTAGACGGTCCAACCATGTTCACTTGGATAGCTGTTACAATAGGAATGTCTGCTC 1239
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||
Sbjct 1145 GATCTTTAGACGGTCCAACCATATTCACTTGGATAGCTGTTACACTAGGAATGTCAGCTC 1204
Query 1240 TTTTTGCTGCCGGATGGTTACCCGACATAGGACCTGTGCCTTTCTTAAGAGCCATACACC 1299
|||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1205 TTTTTGCTGCGGGATGGTTACCCGACATAGGACCTGTGCCTTTCTTACGAGCCCTACACC 1264
Query 1300 TCTTCTTTTTCCGGACAATCACGATTGTAAAGGCTGTCTTCATTGTAGCAGTGGTACTAC 1359
||||||| |||||||||||||||||||| |||||||||||||| ||| ||||||||||||
Sbjct 1265 TCTTCTTCTTCCGGACAATCACGATTGTGAAGGCTGTCTTCATCGTATCAGTGGTACTAC 1324
Query 1360 ATGTTGCAGAAGGAATCTATGCGTGG-TTTCTGGCTAAACGAGTCGACCCAGGAAATGCA 1418
|||||| ||||||||||||||||| | ||| ||||||||||||||||||||||||| |||
Sbjct 1325 ATGTTGGAGAAGGAATCTATGCGTTGCTTT-TGGCTAAACGAGTCGACCCAGGAAACGCA 1383
Query 1419 ATGGGGTGGTTCTTGCAAACCAGCGCTCTCGGGTTTTTCTCAATGCGGTTTTTATTGAAG 1478
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1384 ATGGGCTGGTTCTTGCAAACCTGCGCTCTCGGGTTTTTCTCAATGCGGTTTTTATTGAAG 1443
Query 1479 AGAGCGAAAGAGCACCAGATTTAAACCCAGCCTTGTTTTGATGTT 1523
||||| ||||| ||||||||||||| |||||||| ||||||||||
Sbjct 1444 AGAGCCAAAGACCACCAGATTTAAAACCAGCCTTATTTTGATGTT 1488
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60715850530
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5