BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G33640.1 Length=2110 Score E Sequences producing significant alignments: (Bits) Value Ahg933951 jgi|Araly1|933951|scaffold_401939.1 2806 0.0 > Ahg933951 jgi|Araly1|933951|scaffold_401939.1 Length=1763 Score = 2806 bits (1519), Expect = 0.0 Identities = 1687/1765 (96%), Gaps = 23/1765 (1%) Strand=Plus/Plus Query 261 TTAGGGGTTGTGGGTTTCTTCATTGCAATGGCGAGAAGACATGGATGGCAACTTCCAGCT 320 ||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 2 TTA-GGGTTTTGGGTTTCTTCACTGCAATGGCGAGAAGACATGGATGGCAACTTCCAGCT 60 Query 321 CACACATTTCAGGTTGTTGCCATAACTGTATTTTTCTTGCTAACTGTCGCTTACTATGCC 380 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 61 CACACATTTCAGGTTGTTGCTATAACTGTATTTTTCTTGCTAACTGTCGCTTACTATGCC 120 Query 381 TTCTTTGCTCCATTTCTTGGAAACAAACTCTATGAATATATTGCCATTGGTGTTTACTCT 440 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TTCTTTGCTCCGTTTCTTGGAAACAAACTCTATGAATATATTGCCATTGGTGTTTACTCT 180 Query 441 TTCCTGGCGTTTTCGGTTTTAGTTCTTTACATCCGATGCACTGGTATAGATCCTGCAGAT 500 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 181 TTCCTGGCGTTTTCGGTTTTAGTTCTTTACATTCGATGCACTGGTATAGATCCTGCAGAT 240 Query 501 CCTGGAATCTTTGTGAAGGCTGATAACACTCCAGCTCATAAGTCACAGAACAGTAACTAT 560 |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| Sbjct 241 CCTGGAATCTTTGTGAAGGCTGATTACACTCCAGCTCATAAGTCACAGAATAGTAACTAT 300 Query 561 GTTCCTGAGAATGCTTCAGCAATTGATGGTGGGCCATATATTAGACACGGCTCAGGTTGC 620 || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 GTGCCTGATAATGCTTCAGCAATTGATGGTGGGCCATATATTAGACACGGCTCAGGTTGC 360 Query 621 TGTAGTGCTATAGGAAGATTCATTTGTGGTTGTTTAGTAATACAAGATTGCCGTAGAGAT 680 |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 361 TGTAATGCTATAGGAAGATTCATTTGTGGTTGTTTAGTCATACAAGATTGCCGTAGAGAT 420 Query 681 ACCCAACAAGAGCAATCAAACGAACAAGAAGAAGCTTTGTTCTGCTCATTGTGCAATGCT 740 || |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| Sbjct 421 ACTCAACAAGAGCAATCGAACGAACAAGAAGAAGCTCTGTTCTGCTCATTGTGCAATGCT 480 Query 741 GAGGTACGTATGTTTAGCAAGCACTGTCGAAGTTGTGGCAAGTGTGTAGATGGGTTTGAT 800 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 481 GAGGTACGTATGTTTAGCAAGCACTGTCGAAGCTGTGGCAAGTGTGTAGATGGGTTTGAT 540 Query 801 CACCATTGCCGGTGGCTGAATAACTGTGTGGGGCAGAAAAACTACATCAGCTTTGTGTGT 860 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 CATCATTGCCGGTGGCTGAATAACTGTGTGGGGCAGAAAAACTACATCAGCTTTGTGTGT 600 Query 861 CTTATGGCAGCAAGCTTCTTT-TGGCTTATAGCTGAATTTGGAGTTGGTGTTACTGTATT 919 |||||||| |||||||| ||| ||||| |||||||||||||||||||||||||||||||| Sbjct 601 CTTATGGCGGCAAGCTT-TTTCTGGCTGATAGCTGAATTTGGAGTTGGTGTTACTGTATT 659 Query 920 TGTTCGATGTTTCGTGGACCAAAAGGCGATGGAACATCTTATAACTGAAAAGCTTGGGCT 979 |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 660 TGTTCGATGTTTAGTGGACCAAAAGGCAATGGAACATCTTATAACTGAAAAGCTTGGGCT 719 Query 980 TGGGTTCTCCCGTCCTCCATTTGCCGCTGTTGTGGTTGTTTGTACAACTCTCTCGTTACT 1039 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 720 TGGATTCTCCCGTCCTCCATTTGCCGCTGTTGTGGTTGTTTGTACAACTCTCTCGTTACT 779 Query 1040 GGCTTTGATACCTCTTGGGGAACTTTTCTTTTTCCATATGATTTTGATCCGAAAGGGAAT 1099 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 780 GGCTTTGATACCTCTTGGGGAACTTTTCTTTTTCCATATCATTTTGATCCGAAAGGGAAT 839 Query 1100 CACAACATATGAATATGTTGTTGCCCTGAGAGCGCAAACTGAACCACTTGGAACATCTGT 1159 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 840 CACAACATATGAATATGTTGTTGCCCTGAGAGCGCAAACTGAACAACTTGGAACATCTGT 899 Query 1160 AGATGAGCTAGACCAAACAAGCCAGTATCCTTCACCTGCAAGCTCAGCTGTGACAGCCAC 1219 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 900 AGATGAGCTAGACCAAACAAGCCAGCATCCTTCACCTGCAAGCTCAGCTGTGACAGCCAC 959 Query 1220 GAGTGCTAGAAGCTCTCTCGGATTGAGCATTCAATACCGTGGTGCCTCCTTGTGTACACC 1279 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 960 GAGTGCTAGAAGCTCTCTCGGATTGAGCATTCAATACCGTGGTGTCTCCTTGTGTACACC 1019 Query 1280 CCCAAACATATTCGTGGACCAACAG--G-ACGATGTTATCCAGCATTTGGAGCCTGGACC 1336 |||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||| Sbjct 1020 TCCAAACATATTCATGGACCAACAGCAGGACGATGTTATCCAGCATTTGGAGCCTGGACC 1079 Query 1337 TGTACGATCCACAATAGATCCCGACTCACTTTCACAGAAGAAGCCACCTCAGCGTCAACA 1396 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1080 TGTACGATCCACAATAGATCCCGACTCGCTTTCACAGAAGAAGCCACCTCAGCGTCAACA 1139 Query 1397 AGTAAGGATCAATCCATGGAAGCTGGCAAAACTTGACTCAAAAGAAGCATCTAAAGCAGC 1456 ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| Sbjct 1140 AGTAAGGATCAATCCATGGAAGCTGGCAAAACTCGACTCACAAGAAGCATCTAAAGCAGC 1199 Query 1457 TGCAAAAGCACGTGCATCTTCATCAGTGCTTCTTCCTGTAAGTTCGCGGCAAAACCCTTA 1516 |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| Sbjct 1200 TGCAAAAGCACGTGCATCTTCATCAGTGCTTCTTCCAGTAAGTTCCCGGCAAAACCCTTA 1259 Query 1517 CAAAACCAGCAGCAATGTAAGCGGGAGAAGCAGCCCCGGAAG-AGGCAA-AC-CT-G--- 1569 |||||||||||||||||||||||||||||||||||||| ||| | || || || | Sbjct 1260 CAAAACCAGCAGCAATGTAAGCGGGAGAAGCAGCCCCGCAAGTACCCATCACACTAGAAA 1319 Query 1570 ---C-----TGATTCAGAGTCTTGTAGCCTTAGTAGTCCAGGTTTGACGAGAGATCACTT 1621 | ||||| ||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1320 AGGCAAAGCTGATTTAGAGTCTTGTAGCCTTAGTAGTCCAGGTTTGACAAGAGATCACTT 1379 Query 1622 CAACCCAATGTACATGTCATCACCAGCTAACGAGTCACCTTTAAACGAGGAAGAAAGCAG 1681 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1380 CAACCCAATGTACATGTCATCACCAGCTAACGAGTCACCATTAAACGAGGAAGAAAGCAG 1439 Query 1682 AAATGCTGTTGTTGCAGCTAGAAGAAACTTGCCGTCAAGCGATGAGAGTTCAGTAGTTTG 1741 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1440 AAATGCTGTTGTTGCAGCTAGAAGAAACTTGCCGTCAAACGATGAGAGTTCAGTAGTTTG 1499 Query 1742 GGATCCAGAAGCTGGCCGGTTTGTATCGTTGTCTCGGATTCCCGGAACAGATGTTGG-AG 1800 |||||||||||||||||| |||||||| | |||||||||||||||||||||| |||| || Sbjct 1500 GGATCCAGAAGCTGGCCGATTTGTATCATCGTCTCGGATTCCCGGAACAGATTTTGGCAG 1559 Query 1801 GTCCTCTTGGTAATGAATGTCTCAACACCATAACTTCTACTGGGACTGATCGTAGCAGAA 1860 |||||||||||||||| |||||||||||||||||| | ||||||||||| ||| ||||| Sbjct 1560 -TCCTCTTGGTAATGAACGTCTCAACACCATAACTTGTTCTGGGACTGATGGTAACAGAA 1618 Query 1861 GGGCTAGAGGAAACCCATTGACTGGTTATTTTCAACAGGTTAGATCACAGAGAGGAGACC 1920 ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| Sbjct 1619 GGGCTAGAGGAAACCCATTGACTGGATATTTCCAACAGGTTAGATCACAGAGAGGAGACC 1678 Query 1921 AACTTCCAGTGTTTATGCCTACTGATTCTCAACTGCACAGACATTTATCTACTAGATTCC 1980 |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| Sbjct 1679 AACTTCCAGTGTTTATGCCTACTGATTCTCAACTCCACAGACACTTATCTACTAGATTCC 1738 Query 1981 ATTAGAAACATTTTGTAGATCACCA 2005 | |||| |||||||||||||||||| Sbjct 1739 ACTAGATACATTTTGTAGATCACCA 1763 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 79380070580 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5