BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G33640.1
Length=2110
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933951 jgi|Araly1|933951|scaffold_401939.1 2806 0.0
> Ahg933951 jgi|Araly1|933951|scaffold_401939.1
Length=1763
Score = 2806 bits (1519), Expect = 0.0
Identities = 1687/1765 (96%), Gaps = 23/1765 (1%)
Strand=Plus/Plus
Query 261 TTAGGGGTTGTGGGTTTCTTCATTGCAATGGCGAGAAGACATGGATGGCAACTTCCAGCT 320
||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2 TTA-GGGTTTTGGGTTTCTTCACTGCAATGGCGAGAAGACATGGATGGCAACTTCCAGCT 60
Query 321 CACACATTTCAGGTTGTTGCCATAACTGTATTTTTCTTGCTAACTGTCGCTTACTATGCC 380
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 61 CACACATTTCAGGTTGTTGCTATAACTGTATTTTTCTTGCTAACTGTCGCTTACTATGCC 120
Query 381 TTCTTTGCTCCATTTCTTGGAAACAAACTCTATGAATATATTGCCATTGGTGTTTACTCT 440
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTCTTTGCTCCGTTTCTTGGAAACAAACTCTATGAATATATTGCCATTGGTGTTTACTCT 180
Query 441 TTCCTGGCGTTTTCGGTTTTAGTTCTTTACATCCGATGCACTGGTATAGATCCTGCAGAT 500
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 181 TTCCTGGCGTTTTCGGTTTTAGTTCTTTACATTCGATGCACTGGTATAGATCCTGCAGAT 240
Query 501 CCTGGAATCTTTGTGAAGGCTGATAACACTCCAGCTCATAAGTCACAGAACAGTAACTAT 560
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 241 CCTGGAATCTTTGTGAAGGCTGATTACACTCCAGCTCATAAGTCACAGAATAGTAACTAT 300
Query 561 GTTCCTGAGAATGCTTCAGCAATTGATGGTGGGCCATATATTAGACACGGCTCAGGTTGC 620
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GTGCCTGATAATGCTTCAGCAATTGATGGTGGGCCATATATTAGACACGGCTCAGGTTGC 360
Query 621 TGTAGTGCTATAGGAAGATTCATTTGTGGTTGTTTAGTAATACAAGATTGCCGTAGAGAT 680
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 361 TGTAATGCTATAGGAAGATTCATTTGTGGTTGTTTAGTCATACAAGATTGCCGTAGAGAT 420
Query 681 ACCCAACAAGAGCAATCAAACGAACAAGAAGAAGCTTTGTTCTGCTCATTGTGCAATGCT 740
|| |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 421 ACTCAACAAGAGCAATCGAACGAACAAGAAGAAGCTCTGTTCTGCTCATTGTGCAATGCT 480
Query 741 GAGGTACGTATGTTTAGCAAGCACTGTCGAAGTTGTGGCAAGTGTGTAGATGGGTTTGAT 800
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 481 GAGGTACGTATGTTTAGCAAGCACTGTCGAAGCTGTGGCAAGTGTGTAGATGGGTTTGAT 540
Query 801 CACCATTGCCGGTGGCTGAATAACTGTGTGGGGCAGAAAAACTACATCAGCTTTGTGTGT 860
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CATCATTGCCGGTGGCTGAATAACTGTGTGGGGCAGAAAAACTACATCAGCTTTGTGTGT 600
Query 861 CTTATGGCAGCAAGCTTCTTT-TGGCTTATAGCTGAATTTGGAGTTGGTGTTACTGTATT 919
|||||||| |||||||| ||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 601 CTTATGGCGGCAAGCTT-TTTCTGGCTGATAGCTGAATTTGGAGTTGGTGTTACTGTATT 659
Query 920 TGTTCGATGTTTCGTGGACCAAAAGGCGATGGAACATCTTATAACTGAAAAGCTTGGGCT 979
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 660 TGTTCGATGTTTAGTGGACCAAAAGGCAATGGAACATCTTATAACTGAAAAGCTTGGGCT 719
Query 980 TGGGTTCTCCCGTCCTCCATTTGCCGCTGTTGTGGTTGTTTGTACAACTCTCTCGTTACT 1039
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TGGATTCTCCCGTCCTCCATTTGCCGCTGTTGTGGTTGTTTGTACAACTCTCTCGTTACT 779
Query 1040 GGCTTTGATACCTCTTGGGGAACTTTTCTTTTTCCATATGATTTTGATCCGAAAGGGAAT 1099
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 780 GGCTTTGATACCTCTTGGGGAACTTTTCTTTTTCCATATCATTTTGATCCGAAAGGGAAT 839
Query 1100 CACAACATATGAATATGTTGTTGCCCTGAGAGCGCAAACTGAACCACTTGGAACATCTGT 1159
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 840 CACAACATATGAATATGTTGTTGCCCTGAGAGCGCAAACTGAACAACTTGGAACATCTGT 899
Query 1160 AGATGAGCTAGACCAAACAAGCCAGTATCCTTCACCTGCAAGCTCAGCTGTGACAGCCAC 1219
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 900 AGATGAGCTAGACCAAACAAGCCAGCATCCTTCACCTGCAAGCTCAGCTGTGACAGCCAC 959
Query 1220 GAGTGCTAGAAGCTCTCTCGGATTGAGCATTCAATACCGTGGTGCCTCCTTGTGTACACC 1279
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 960 GAGTGCTAGAAGCTCTCTCGGATTGAGCATTCAATACCGTGGTGTCTCCTTGTGTACACC 1019
Query 1280 CCCAAACATATTCGTGGACCAACAG--G-ACGATGTTATCCAGCATTTGGAGCCTGGACC 1336
|||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 1020 TCCAAACATATTCATGGACCAACAGCAGGACGATGTTATCCAGCATTTGGAGCCTGGACC 1079
Query 1337 TGTACGATCCACAATAGATCCCGACTCACTTTCACAGAAGAAGCCACCTCAGCGTCAACA 1396
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1080 TGTACGATCCACAATAGATCCCGACTCGCTTTCACAGAAGAAGCCACCTCAGCGTCAACA 1139
Query 1397 AGTAAGGATCAATCCATGGAAGCTGGCAAAACTTGACTCAAAAGAAGCATCTAAAGCAGC 1456
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 1140 AGTAAGGATCAATCCATGGAAGCTGGCAAAACTCGACTCACAAGAAGCATCTAAAGCAGC 1199
Query 1457 TGCAAAAGCACGTGCATCTTCATCAGTGCTTCTTCCTGTAAGTTCGCGGCAAAACCCTTA 1516
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1200 TGCAAAAGCACGTGCATCTTCATCAGTGCTTCTTCCAGTAAGTTCCCGGCAAAACCCTTA 1259
Query 1517 CAAAACCAGCAGCAATGTAAGCGGGAGAAGCAGCCCCGGAAG-AGGCAA-AC-CT-G--- 1569
|||||||||||||||||||||||||||||||||||||| ||| | || || || |
Sbjct 1260 CAAAACCAGCAGCAATGTAAGCGGGAGAAGCAGCCCCGCAAGTACCCATCACACTAGAAA 1319
Query 1570 ---C-----TGATTCAGAGTCTTGTAGCCTTAGTAGTCCAGGTTTGACGAGAGATCACTT 1621
| ||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1320 AGGCAAAGCTGATTTAGAGTCTTGTAGCCTTAGTAGTCCAGGTTTGACAAGAGATCACTT 1379
Query 1622 CAACCCAATGTACATGTCATCACCAGCTAACGAGTCACCTTTAAACGAGGAAGAAAGCAG 1681
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1380 CAACCCAATGTACATGTCATCACCAGCTAACGAGTCACCATTAAACGAGGAAGAAAGCAG 1439
Query 1682 AAATGCTGTTGTTGCAGCTAGAAGAAACTTGCCGTCAAGCGATGAGAGTTCAGTAGTTTG 1741
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1440 AAATGCTGTTGTTGCAGCTAGAAGAAACTTGCCGTCAAACGATGAGAGTTCAGTAGTTTG 1499
Query 1742 GGATCCAGAAGCTGGCCGGTTTGTATCGTTGTCTCGGATTCCCGGAACAGATGTTGG-AG 1800
|||||||||||||||||| |||||||| | |||||||||||||||||||||| |||| ||
Sbjct 1500 GGATCCAGAAGCTGGCCGATTTGTATCATCGTCTCGGATTCCCGGAACAGATTTTGGCAG 1559
Query 1801 GTCCTCTTGGTAATGAATGTCTCAACACCATAACTTCTACTGGGACTGATCGTAGCAGAA 1860
|||||||||||||||| |||||||||||||||||| | ||||||||||| ||| |||||
Sbjct 1560 -TCCTCTTGGTAATGAACGTCTCAACACCATAACTTGTTCTGGGACTGATGGTAACAGAA 1618
Query 1861 GGGCTAGAGGAAACCCATTGACTGGTTATTTTCAACAGGTTAGATCACAGAGAGGAGACC 1920
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1619 GGGCTAGAGGAAACCCATTGACTGGATATTTCCAACAGGTTAGATCACAGAGAGGAGACC 1678
Query 1921 AACTTCCAGTGTTTATGCCTACTGATTCTCAACTGCACAGACATTTATCTACTAGATTCC 1980
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1679 AACTTCCAGTGTTTATGCCTACTGATTCTCAACTCCACAGACACTTATCTACTAGATTCC 1738
Query 1981 ATTAGAAACATTTTGTAGATCACCA 2005
| |||| ||||||||||||||||||
Sbjct 1739 ACTAGATACATTTTGTAGATCACCA 1763
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79380070580
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5