BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G33670.1
Length=1666
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482315 jgi|Araly1|482315|fgenesh2_kg.4__1375__AT2G33670.1 2494 0.0
> Ahg482315 jgi|Araly1|482315|fgenesh2_kg.4__1375__AT2G33670.1
Length=1550
Score = 2494 bits (1350), Expect = 0.0
Identities = 1486/1551 (96%), Gaps = 12/1551 (1%)
Strand=Plus/Plus
Query 115 GGAGGAGGAGGTGGTAGCACTTCTGGAGAAGGTCCTAGAGAGCTCGATCAGACACCGACA 174
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 10 GGAGGAGGAGGTGGTAGCACTTCTGGAGAAGGTCCGAGAGAGCTCGATCAGACACCGACA 69
Query 175 TGGGCCGTCTCCACTGTTTGTGGCGTTATCATCTTGATCTCTATCGTTCTAGAGCTCATG 234
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 70 TGGGCCGTCTCTACTGTTTGTGGCGTTATCATCTTAATCTCTATCGTTCTAGAGCTCATG 129
Query 235 ATTCACAAAATCGGAGAGGTTTTCACTG-AAAGAAGGAAGAAAGCTTTGTACGAAGCGCT 293
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||
Sbjct 130 ATTCACAAAATCGGAGAGGTTTTCAC-GAAAAGAAGGAAGAAAGCTTTGTACGAAGCTCT 188
Query 294 TCAAAAGATCAAGAACGAGCTTATGGTTTTGGGATTCATTTCTTTGTTATTAACATTTGG 353
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 189 TCAAAAGATCAAGAACGAGCTTATGGTTTTGGGATTCATTTCTCTGTTATTAACATTTGG 248
Query 354 ACAAAACTACATAGCAAGTTTGTGTGTGGCGTCAAGATACGGCCATGCGATGTCCTTTTG 413
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 249 ACAAAACTACATAGCAAGCTTGTGTGTGGCGACAAGATACGGCCATGCGATGTCCTTTTG 308
Query 414 TGGTCCATACGATGGTCCAAGTGGTGAGTCTAAGAAGCCAAAGACTACCGAACACTTAGA 473
|||||| |||||||||||||||||||||||||||||||||||||||||| | |||||| |
Sbjct 309 TGGTCCGTACGATGGTCCAAGTGGTGAGTCTAAGAAGCCAAAGACTACCCACCACTTACA 368
Query 474 ACGTCGTGTTTTGGCTGATGCTGCTCCAGCTCAGTGCAAGAAGGGCTATGTACCGCTTAT 533
||| ||||||||||||||||| |||||| |||||||||||||||| ||||| || |||||
Sbjct 369 ACGCCGTGTTTTGGCTGATGCCGCTCCAACTCAGTGCAAGAAGGGTTATGTGCCACTTAT 428
Query 534 ATCACTCAACGCGTTGCATCAAGTGCATATCTTCATCTTTTTCTTGGCTGTGTTTCATGT 593
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 429 ATCACTCAACGCGTTGCATCAAGTGCATATCTTCATCTTCTTCTTGGCTGTGTTTCATGT 488
Query 594 CATTTATAGTGCTATTACCATGATGCTTGGACGAGCAAAGATTCGTGGATGGAAAGTTTG 653
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 489 CATTTATAGTGCTATTACCATGATGCTTGGAAGAGCGAAGATTCGTGGATGGAAAGTTTG 548
Query 654 GGAGGAAGAAGTCATAAATGATCATGAAATGATGAATGACCCTTCAAGGTTTAGGCTCAC 713
|||||||||||||||||||||||| ||||||||| |||| |||||||| |||||||||||
Sbjct 549 GGAGGAAGAAGTCATAAATGATCACGAAATGATGGATGATCCTTCAAGATTTAGGCTCAC 608
Query 714 ACATGAGACATCATTTGTTAGAGAGCATGTCAATCCTTGGGCCAAAAATAGATTCTCATT 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 609 ACATGAGACATCATTTGTTAGAGAGCATGTCAATCCTTGGGCCAAAAATAGATTCTCCTT 668
Query 774 CTACGTTATGTGTTTCTTTCGTCAAATGCTGAGATCTGTCAGAAAATCTGATTATTTGAC 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 669 CTACGTTATGTGTTTCTTTCGTCAAATGCTGAGATCTGTCAGAAAATCTGATTATTTGAC 728
Query 834 AATGCGTCATGGTTTCATAAGTGTCCATTTGGCACCGGGTATGAAGTTTAATTTCCAAAA 893
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 729 AATGCGTCATGGGTTCATAAGTGTCCATTTGGCACCCGGTATGAAGTTTAATTTCCAAAA 788
Query 894 ATACATCAAAAGATCATTGGAAGACGACTTCAAGGTAGTCGTGGGAATAAGTCCCGAGCT 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 789 ATACATCAAAAGATCATTGGAAGACGACTTCAAGGTAGTCGTGGGAATAAGTCCCGAGCT 848
Query 954 ATGGGCCTTTGTAATGCTCTTTTTGCTCTTTGATGTTCACGGGTGGTATGTTACTGCTGT 1013
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 849 ATGGGCCTTTGTAATGCTCTTTTTACTCTTTGATGTTCACGGATGGTATGTTACTGCTGT 908
Query 1014 GATCACCATGATTCCTCCACTTTTGACATTAGCGATAGGAACCAAGCTTCAAGCCATCAT 1073
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 909 GATCACCATGATTCCTCCAGTTTTGACATTAGCGATAGGAACCAAGCTTCAAGCCATCAT 968
Query 1074 CTCAGACATGGCGTTGGAAATTCAGGAGAGACACGCCGTGATACAAGGGATGCCACTTGT 1133
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 969 ATCAGACATGGCGTTGGAGATTCAGGAGAGACACGCCGTGATACAAGGGATGCCACTTGT 1028
Query 1134 CAATGTCTCTGATCGACATTTCTGGTTTAGTCGTCCCGCCTTAGTCCTCCATATCATCCA 1193
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1029 CAATGTCTCTGACCGACATTTCTGGTTAAGTCGTCCCGCCTTAGTCCTCCATATCATCCA 1088
Query 1194 CTTCATTCTCTTCCAGAATGCTTTTGAGATCACCTACTTCTTCTGGATATGGTATGAGTT 1253
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1089 CTTCATTCTCTTCCAGAATGCTTTTGAGATCACTTACTTCTTCTGGATATGGTATGAGTT 1148
Query 1254 CGGGTTACGGTCCTGTTTTCATCACCATTTCGCGCTAATAATCATAAGGGTTGCTCTTGG 1313
||||||||||||||||||||||||||||||||| || ||||||||| | |||||||| ||
Sbjct 1149 CGGGTTACGGTCCTGTTTTCATCACCATTTCGCCCTCATAATCATACGTGTTGCTCTCGG 1208
Query 1314 GGTGGGAGTACAATTTCTCTGCAGTTACATCACACTTCCTCTTTACGCTCTCGTGACTCA 1373
||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1209 AGTGGGAGTACAATTTCTCTGCAGTTACATCACACTTCCTCTTTACGCTCTC---A-T-- 1262
Query 1374 GATGGGATCAACGATGAAGCGATCGGTGTTTGATGATCAAACGTCAAAGGCATTAAAGAA 1433
| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1263 G--GG-ATCAACGATGAAGCGATCGGTGTTTGATGATCAAACGTCAAAGGCATTAAAGAA 1319
Query 1434 TTGGCATAAAAATGCAAAGAAAAAGAGCGAAACTCCTGGTCAAACGCAGCCTCCATTGCC 1493
||||||||| |||||||||||||||||||||||| | |||| || |||| ||||||||||
Sbjct 1320 TTGGCATAAGAATGCAAAGAAAAAGAGCGAAACTTCAGGTCCAATGCAGTCTCCATTGCC 1379
Query 1494 TAATCTCCGACCTAAAACCGGCGGCGATATTGAGTCTGCTTCTCCGGCCAATATCACGGC 1553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 TAATCTCCGACCTAAAACCGGCGGCGATATTGAGTCTGCTTCTCCGGCCAATATCACGGC 1439
Query 1554 TAGTGTTGATGTTAAAGAAAGTGATCAATCTCAATCTAGAGACCTCTTAAGCGGTCCCTA 1613
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1440 TAGTGTTGATGTTAAAGAAAGTGATCAATCTCAACCTCGAGACCTCTTAAGCGGTCCCTA 1499
Query 1614 AAAAACCAAACGGGTCAA-GACATTACTTTCACTTAACCGGCTTACTCTAA 1663
||||||||||| |||||| |||| ||| ||||||||||||||||| |||||
Sbjct 1500 AAAAACCAAACCGGTCAAAGACACTACGTTCACTTAACCGGCTTATTCTAA 1550
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62468001800
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5