BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G33690.1

Length=390
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg482317 jgi|Araly1|482317|fgenesh2_kg.4__1377__AT2G33690.1         464    2e-130


> Ahg482317 jgi|Araly1|482317|fgenesh2_kg.4__1377__AT2G33690.1
Length=381

 Score =  464 bits (251),  Expect = 2e-130
 Identities = 348/391 (89%), Gaps = 21/391 (5%)
 Strand=Plus/Plus

Query  2    TGTCGAAGAGTGAAGAGAAACAAGAGTTGCCACTAGAAACAAGTCCGTATACAAAGTACG  61
            |||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||| |
Sbjct  5    TGTCGAAGAGAGAAGAGAAACAAGAATTGCCACTAGAAACAAGTCCGTACACAAAGTATG  64

Query  62   AGGATATAGAGGATTACAAGAAGAATGCTTATGGAACTTCCGGTCACCAGGACGTTAAGC  121
            |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  65   AGGATATAGAAGATTACAAGAAGAATGCTTATGGAACTTCCGGTCACCAAGACGTTAAGC  124

Query  122  CTGGCCACGGCGGCGGCACAACCGACGCACCGACCCCCTCCGGT-GATGCTGCTCCCTCC  180
            ||||||| ||||| |||||||||||||||||||||| ||||||| | || ||||||||| 
Sbjct  125  CTGGCCAAGGCGGAGGCACAACCGACGCACCGACCCTCTCCGGTAG-TGGTGCTCCCTCT  183

Query  181  GCCATAGATTCCGCTAACCAAAAAGCTAAGAAGTGAACCACTCACAAAATGTT-TCTCTT  239
            |||||||||||||||||||||||||||||||||||||    | |     | || ||||||
Sbjct  184  GCCATAGATTCCGCTAACCAAAAAGCTAAGAAGTGAA----T-A-----T-TTCTCTCTT  232

Query  240  GATTCTGTTTT-AGTTACTCTCCAATGTGATTCATTTGACGCATTGTGATAATTGACATG  298
            | ||||| ||| | |||||||||||||||||| |||| |||| |||||||||||||||||
Sbjct  233  GCTTCTGGTTTGA-TTACTCTCCAATGTGATTTATTTAACGCTTTGTGATAATTGACATG  291

Query  299  tttttgtttttt---C-TCCTTTTCTCCATTGATATGATCCAATCTAAGATCAATAAATA  354
            ||||||||||||   | ||||||| ||||||| ||||||||||||||| |||||||||||
Sbjct  292  TTTTTGTTTTTTTTTCCTCCTTTTATCCATTGTTATGATCCAATCTAA-ATCAATAAATA  350

Query  355  GATGTCAAGTCGAAGGGATTTTGGCCATCTT  385
            ||||| ||||| ||||||||||| || ||||
Sbjct  351  GATGTTAAGTCTAAGGGATTTTGACCGTCTT  381



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13964945574


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5