BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G33707.1

Length=240
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg482319 jgi|Araly1|482319|fgenesh2_kg.4__1379__AT2G33707.1         272    7e-73


> Ahg482319 jgi|Araly1|482319|fgenesh2_kg.4__1379__AT2G33707.1
Length=219

 Score =  272 bits (147),  Expect = 7e-73
 Identities = 196/217 (90%), Gaps = 14/217 (6%)
 Strand=Plus/Plus

Query  37   ACGATGACAGAAAGCAAAAGATGTCACAAAGACTCAGATTGCAAAAACAAAGTACCATGT  96
            ||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||
Sbjct  4    ACGATGACAGAAAGCAAAAAATGTCACAAAGACTCAGATTGCAAACACAAAATACCATGT  63

Query  97   GCAATTCCTGTTGCCTGTCTATATGGCGGTTGCGTTTGTACATTAA----A---GCA---  146
            ||||||||||||||||||||||||||||||||||||||||||||||    |   |||   
Sbjct  64   GCAATTCCTGTTGCCTGTCTATATGGCGGTTGCGTTTGTACATTAATGGCATTTGCAAAT  123

Query  147  -G-TCTTTCTCTGCTTGTAAACTTATGTGTGCACAGCAGGGAAAAAACACTATAAACCGT  204
             | |||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
Sbjct  124  CGGTCTTTCTCTGCTTGTAAACTTATGTGTGCACAGCTGGGAAAAAACACTATAAGCCAT  183

Query  205  TTTGATTCT-GATCATTGTGTTTGCGGCGTTAAGTAA  240
            ||||||||| | ||||||||||||||||| |||||||
Sbjct  184  TTTGATTCTAG-TCATTGTGTTTGCGGCGATAAGTAA  219



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8286852637


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5