BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G33710.2
Length=939
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482320 jgi|Araly1|482320|fgenesh2_kg.4__1380__AT2G33710.1 1062 0.0
> Ahg482320 jgi|Araly1|482320|fgenesh2_kg.4__1380__AT2G33710.1
Length=1280
Score = 1062 bits (575), Expect = 0.0
Identities = 682/732 (93%), Gaps = 14/732 (2%)
Strand=Plus/Plus
Query 7 GCTGGTTCTTTGGCTTGTACCCAAACCCATCTTTGACTTCaaaaataaaataaaaataat 66
|||| |||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1 GCTGTTTCTTTGGCTTGTACCCAAACCCATCTTTGACTTCAAAAATATAACAAAAATAAT 60
Query 67 CATAATTGACATCATCGGATAATGCATAGCGGGAAGAGACCTCTATCACCAGAATCAATG 126
||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 61 CATAATTGATATCATCGGATAATGCATAGTGGGAAGAGACCTCTTTCACCAGAATCAATG 120
Query 127 GCCGGAAATAGAGAAGAGAAAAAAGAGTTGTGTTGTTGCTCAACTTTGTCGGAATCTGAT 186
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GCCGGAAAAAAAGAAGAGAAAAAAGAGTTGTGTTGTTGCTCAACTTTGTCGGAATCTGAT 180
Query 187 GTGTCTGATTTTGTCTCTGAACTCACTGGTCAACCCATCCCATCATCCATTGATGATCAA 246
||||||| |||||||||||||||||||| ||||||| |||| ||||||| |||||||||
Sbjct 181 GTGTCTGCTTTTGTCTCTGAACTCACTGAACAACCCACCCCACCATCCATGGATGATCAA 240
Query 247 TCT-TCGTCGCTTACTCTTCAAGAAAAAAGTAACTCGAGGCAACGAAACTACAGAGGCGT 305
||| | | ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 241 TCTAT-GCCGCTTACTCTTCAAGAACAAAGTAACTCGAGGCAACGAAACTACAGAGGCGT 299
Query 306 GAGGCAAAGACCGTGGGGAAAATGGGCGGCTGAGATTCGTGACCCGAACAAGGCAGCTCG 365
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 300 GAGGCAAAGACCGTGGGGAAAATGGGCGGCCGAGATTCGTGACCCGAATAAGGCAGCTCG 359
Query 366 TGTGTGGCTTGGGACGTTCGACACTGCAGAAGAAGCCGCCTTAGCGTATGATAAAGCTGC 425
||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||
Sbjct 360 TGTGTGGCTTGGGACGTTCGACACTGCCGAAGAAGCTGCCTTAGCATATGATAAAGCTGC 419
Query 426 ATTTGAGTTTAGAGGTCACAAGGCCAAGCTTAACTTCCCCGAGCATATTCGTGTCAACCC 485
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 420 ATTTGAGTTTAGAGGTCACAAGGCCAAGCTTAACTTCCCCGAGCACATTCGTGTCAACCC 479
Query 486 TACTCAACTCTATCCATCGCCCGCTACTTCCCATGATCGCATTATCGTGACACCACCTAG 545
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TACTCAACTCTATCCATCAACCGCTACTTCCCATGATCGCATTATCGTGACACCACCTAG 539
Query 546 TCCACCTCCACCAATTGCTCCTGACATACTTCTTGATCAATATGGCCACTTTCAATCTCG 605
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 ACCACCTCCAACAATTGCTCCTGACATACTTCTTGATCAATATGGCCACTTTCAATCTCC 599
Query 606 AAGTAGTGATTCCAG-TGCCAACTTGTCCATGAATATG-CTGTCTTCTTCGTC-T--TCA 660
|| ||||||||| || ||||||||| |||||||||||| | |||||||||||| | |||
Sbjct 600 AAATAGTGATTC-AGGTGCCAACTTATCCATGAATATGTC-GTCTTCTTCGTCGTCGTCA 657
Query 661 TCTTTGAATCATCAAGGGC-TAAGACCAAATTTGGAGGATGGTGAAAACGTCATGA-CGA 718
| |||||||||||||| | || |||||||||||||||||| ||||||||| | || | |
Sbjct 658 TTTTTGAATCATCAAGAACATA-GACCAAATTTGGAGGATGATGAAAACGTGAAGAAC-A 715
Query 719 CTA-TATCCACA 729
|| ||||||||
Sbjct 716 TTACTATCCACA 727
Score = 148 bits (80), Expect = 5e-35
Identities = 115/130 (88%), Gaps = 10/130 (8%)
Strand=Plus/Plus
Query 805 GTCGGATCAGGTTGGGTCGAGTATATCAGGTAGAAAAAAGCTCGTACATGGTGCTTTATG 864
|||||||||||||||||||||||||||||||||| ||||| | || | |||||||||
Sbjct 942 GTCGGATCAGGTTGGGTCGAGTATATCAGGTAGATAAAAG-T-GT----G-TGCTTTATG 994
Query 865 TCTTTCCACTCCGAAGTA--GCTTGCTAGTT-TATCCTTTTGTATCACGTACGAAAGAGA 921
||||||||||| |||||| ||||||||||| | ||||||||||||||||| ||||||||
Sbjct 995 TCTTTCCACTCAGAAGTATAGCTTGCTAGTTATCTCCTTTTGTATCACGTATGAAAGAGA 1054
Query 922 Taaaaaaaaa 931
| ||||||||
Sbjct 1055 TTAAAAAAAA 1064
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34844346138
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5