BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G33720.1 Length=1238 Score E Sequences producing significant alignments: (Bits) Value Ahg321098 jgi|Araly1|321098|fgenesh1_pm.C_scaffold_4001155 1101 0.0 Ahg347288 jgi|Araly1|347288|fgenesh1_pg.C_scaffold_5000680 320 1e-86 Ahg949018 jgi|Araly1|949018|scaffold_800905.1 305 4e-82 > Ahg321098 jgi|Araly1|321098|fgenesh1_pm.C_scaffold_4001155 Length=975 Score = 1101 bits (596), Expect = 0.0 Identities = 856/980 (87%), Gaps = 23/980 (2%) Strand=Plus/Plus Query 53 GCCTCCTCCCTTTTCTGCGTCGAAGACTCAATACTTGTTCCACGACGAGTCATCGGAAAA 112 ||||| ||| |||||||| || || ||||||||||||||| | | | |||||||||| || Sbjct 12 GCCTCTTCCTTTTTCTGCATCAAATACTCAATACTTGTTCTATGGCAAGTCATCGGAGAA 71 Query 113 CTCTAAAAAGAGTTTGGTCTCCACAACTCTTTCTTTGTCGTCTTGTGAAAACCCTAATAA 172 | |||||||||||||||||||||| ||||| | ||||||||||||||||||||| || || Sbjct 72 CCCTAAAAAGAGTTTGGTCTCCACGACTCTCTGTTTGTCGTCTTGTGAAAACCCAAAGAA 131 Query 173 GAGGAAGATGAACTCTGACGAAGTTCTCAATATTTCTTGCATACCAAGAGACTACAAATT 232 |||||||||||||||||| || | || || |||||||||||||||| ||||||||||| Sbjct 132 GAGGAAGATGAACTCTGATGATGACCTGAAGGTTTCTTGCATACCAAGCGACTACAAATT 191 Query 233 AACACAAGTAGAAAGAAAGATTGCACGAATGAGGAATCTCTCGTATCAAGAAAAGGCAGA 292 |||| ||||||||||||||||||||||||||||||||||| || || |||||| |||| Sbjct 192 AACAAAAGTAGAAAGAAAGATTGCACGAATGAGGAATCTCACGAATGAAGAAAGGGCACT 251 Query 293 GGACGAATGGTACGGTGTCTCAACAGAACTAACACTCTTCAAGGATCCGTGGATCATCAA 352 |||||||||||| ||||||||||| |||||||||||||| || ||||||||||||||||| Sbjct 252 GGACGAATGGTATGGTGTCTCAACTGAACTAACACTCTTTAAAGATCCGTGGATCATCAA 311 Query 353 AAAGGTTTTTCACTTTGCTTC-AGTCTTGGATATGGCTCCCAACTCAGTCTCAAATACTC 411 ||||||||||||||| |||| | || ||||||| | || | || | | ||||||| Sbjct 312 GAAGGTTTTTCACTTTTCTTCTA-TCATGGATAT-G----CATCCCA-T-T--AATACTC 361 Query 412 ATTGCTTGTTGGAC-ACG--GAGTCACCAGAAAACGCTGAAGAGAGTTTGGTCTCCCTGG 468 |||| |||||||| || ||||| |||||||| |||||||||||||||||||||||| Sbjct 362 TTTGCCTGTTGGACGCCGTCGAGTCGTCAGAAAACCCTGAAGAGAGTTTGGTCTCCCTGG 421 Query 469 ATCTGTGTTTCTATGACAAAACATGGCCACATGATCCCAATGTTGCTTACAATAAACCAA 528 |||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||| Sbjct 422 ATCTGTGTTTGTATGACAGAACATGGCCACATGATCCCAACGTTGCTTACAATAAACCAA 481 Query 529 CGTCCGAAGAAGCAATAAACCTGGCGTGGATGAGGACTATGTCGAA-GAGAGCAAGAAAA 587 |||||| |||| ||| ||||| |||||||||||||||| |||||| || |||||||||| Sbjct 482 CGTCCGGAGAAAAAATGAACCTCGCGTGGATGAGGACTAAGTCGAATGA-AGCAAGAAAA 540 Query 588 GAAGAGGAGAAGTACTACGTCTCGACAGAACTAACTCTCCTCACCGTCGCTGACCCATGG 647 |||||||||| |||| ||||||| |||||||||||||||||||| ||| | || |||||| Sbjct 541 GAAGAGGAGAGGTACAACGTCTCAACAGAACTAACTCTCCTCACGGTCACCGATCCATGG 600 Query 648 ACCTTGAAGATGGCAATGACCAAAAGCAGTATTGGCAACCTATACCGTCTTGTTCTAAAG 707 |||||||||| || |||||||||| ||||| ||||| | ||| | ||||||||||||||| Sbjct 601 ACCTTGAAGAAGGTAATGACCAAATGCAGTCTTGGCCATCTAAAACGTCTTGTTCTAAAG 660 Query 708 GCGAGCTTTGTAGACATCCACATTCTGAGATATCTCCCTTTGGATGATCAAATGATGGTC 767 | |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 661 GAGAGCTTTGTACACATCCACATTCTGAGATATCTCCCTGTGGATGATCAAATGATGGTC 720 Query 768 AAAGAAGACTCTGGATTAGCAGTCGAGGTGTATGATCACGACACTGACTCTGTGCACAAT 827 |||||| |||||||||| ||||||| |||||||||||||||||||| ||| | |||| Sbjct 721 CAAGAAGGCTCTGGATTAACAGTCGACGTGTATGATCACGACACTGATTCTACGTACAAG 780 Query 828 CTGGCTCTTAA-GAAATGGGCCAAATCTTCAAGCTTTGTTCTCGTCAGCGGATGGCGTAA 886 ||| || |||| |||||||||||| | | |||| ||||||||| ||| |||||||| || Sbjct 781 CTG-CTTTTAAAGAAATGGGCCAAGTATCCAAGGTTTGTTCTCATCAACGGATGGCATAC 839 Query 887 GTGCTTTGTCGAC-AGAAGAGGTTTGCAGGTTGGCGATGTGATTGGAATGTATTGGGATC 945 |||||||||| || || ||||||||| || |||||||||||||||||||||||||||| Sbjct 840 GTGCTTTGTC-ACCAGGAGAGGTTTGAAGAAAGGCGATGTGATTGGAATGTATTGGGATC 898 Query 946 GTTCTGAATCTAAGCTTCATTTTTGTGTGCTTTCTCGTTCCGAAACAATGGATTCAGCTC 1005 | |||||||||||| ||||||||||||||||||||||| | | ||||||||||||||| Sbjct 899 GATCTGAATCTAAGATTCATTTTTGTGTGCTTTCTCGTGC--AC-CAATGGATTCAGCTC 955 Query 1006 CTCTTCCTCCAAGTCCATAG 1025 |||||||||||||| ||||| Sbjct 956 CTCTTCCTCCAAGTACATAG 975 > Ahg347288 jgi|Araly1|347288|fgenesh1_pg.C_scaffold_5000680 Length=675 Score = 320 bits (173), Expect = 1e-86 Identities = 272/318 (86%), Gaps = 14/318 (4%) Strand=Plus/Plus Query 45 ATGAAGATGCCTCCTCCCTTTTCTGCGTCGAAGACT---CAATACTTGTTCCACGACGAG 101 |||||||||||| || ||||||||| | ||| ||| ||||||||| || ||||| | Sbjct 1 ATGAAGATGCCT-CT--CTTTTCTGCATTGAAAACTCAACAATACTTG-TCTACGAC--G 54 Query 102 TCATCGGAAAACTCTAAAAAGAGTTTGGTCTCCACAACTCTTTCTTTGTCGTCTTGTGAA 161 ||||| |||||| |||||||| ||||||||||||| ||||| | |||||||||||||||| Sbjct 55 TCATCAGAAAACCCTAAAAAGTGTTTGGTCTCCACGACTCTCTGTTTGTCGTCTTGTGAA 114 Query 162 AACCCTAATAAGAGGAAGATGAACTCTGACGAAGTTCTCAATATTTCTTGCATACCAAGA 221 |||||||||||||||||||||||| || | || | || ||| ||||||||| |||||| Sbjct 115 AACCCTAATAAGAGGAAGATGAACACTAATGATGATCCCAAGGTTTCTTGCAGACCAAGC 174 Query 222 GACTACAAATTAACACAA-GTAGAAAGAAAGATTGCACGAATGAGGAATCTCTCGTATC- 279 ||| | |||| ||| ||| | ||||||||||||| |||||||||||| |||||| | | Sbjct 175 GACGAAAAATCAAC-CAATGAAGAAAGAAAGATTAAACGAATGAGGAACCTCTCGAA-CG 232 Query 280 AAGAAAAGGCAGAGGACGAATGGTACGGTGTCTCAACAGAACTAACACTCTTCAAGGATC 339 |||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||| Sbjct 233 AAGAAAAGGCAGAGGAAGAATGGTACGGTGTTTCAACAGAACTAACACTCTTCAAAGATC 292 Query 340 CGTGGATCATCAA-AAAG 356 | ||||||||||| |||| Sbjct 293 CATGGATCATCAAGAAAG 310 > Ahg949018 jgi|Araly1|949018|scaffold_800905.1 Length=413 Score = 305 bits (165), Expect = 4e-82 Identities = 230/261 (88%), Gaps = 6/261 (2%) Strand=Plus/Plus Query 101 GTCATCGGAAAACTCTAAAAAGAGTTTGGTCTCCACAACTCTTTCTTTGTCGTCTTGTGA 160 ||| ||||||||| |||| |||| |||||||||||| ||||| | ||||||||| ||| | Sbjct 23 GTCGTCGGAAAACCCTAACAAGATTTTGGTCTCCACGACTCTATGTTTGTCGTCATGTAA 82 Query 161 AAACCCTAATAAGAGGAAGATGAACTCTGACGAAG-TTCTCAATATTTCTTGCATACCAA 219 |||||| ||||||||||||||||||||| || | | || || ||||||||| ||||| Sbjct 83 AAACCC---TAAGAGGAAGATGAACTCTGATGATGATCCT-AAGGTTTCTTGCAGACCAA 138 Query 220 GAGACTACAAATTAACACAAGTAGAAAGAAAGATTGCACGAATGAGGAATCTCTCGTATC 279 | ||||||||||||||| ||| |||||||||||||||||||||||||||||||||| || Sbjct 139 GCGACTACAAATTAACAAAAGAAGAAAGAAAGATTGCACGAATGAGGAATCTCTCGAATG 198 Query 280 AAGAAAAGGCAGAGGACGAATGGTACGGTGTCTCAACAGAACTAACACTCTTCAAG-GAT 338 ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||| Sbjct 199 AAGAAAAGGCAGAGGACGAATGGTACGGTATCTCAACAGAACTAACACTTTTCAAAAGAT 258 Query 339 CCGTGGATCATCAAAAAGGTT 359 || ||||||||||| |||||| Sbjct 259 CCTTGGATCATCAAGAAGGTT 279 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46243098321 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5