BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G33720.1
Length=1238
Score E
Sequences producing significant alignments: (Bits) Value
Ahg321098 jgi|Araly1|321098|fgenesh1_pm.C_scaffold_4001155 1101 0.0
Ahg347288 jgi|Araly1|347288|fgenesh1_pg.C_scaffold_5000680 320 1e-86
Ahg949018 jgi|Araly1|949018|scaffold_800905.1 305 4e-82
> Ahg321098 jgi|Araly1|321098|fgenesh1_pm.C_scaffold_4001155
Length=975
Score = 1101 bits (596), Expect = 0.0
Identities = 856/980 (87%), Gaps = 23/980 (2%)
Strand=Plus/Plus
Query 53 GCCTCCTCCCTTTTCTGCGTCGAAGACTCAATACTTGTTCCACGACGAGTCATCGGAAAA 112
||||| ||| |||||||| || || ||||||||||||||| | | | |||||||||| ||
Sbjct 12 GCCTCTTCCTTTTTCTGCATCAAATACTCAATACTTGTTCTATGGCAAGTCATCGGAGAA 71
Query 113 CTCTAAAAAGAGTTTGGTCTCCACAACTCTTTCTTTGTCGTCTTGTGAAAACCCTAATAA 172
| |||||||||||||||||||||| ||||| | ||||||||||||||||||||| || ||
Sbjct 72 CCCTAAAAAGAGTTTGGTCTCCACGACTCTCTGTTTGTCGTCTTGTGAAAACCCAAAGAA 131
Query 173 GAGGAAGATGAACTCTGACGAAGTTCTCAATATTTCTTGCATACCAAGAGACTACAAATT 232
|||||||||||||||||| || | || || |||||||||||||||| |||||||||||
Sbjct 132 GAGGAAGATGAACTCTGATGATGACCTGAAGGTTTCTTGCATACCAAGCGACTACAAATT 191
Query 233 AACACAAGTAGAAAGAAAGATTGCACGAATGAGGAATCTCTCGTATCAAGAAAAGGCAGA 292
|||| ||||||||||||||||||||||||||||||||||| || || |||||| ||||
Sbjct 192 AACAAAAGTAGAAAGAAAGATTGCACGAATGAGGAATCTCACGAATGAAGAAAGGGCACT 251
Query 293 GGACGAATGGTACGGTGTCTCAACAGAACTAACACTCTTCAAGGATCCGTGGATCATCAA 352
|||||||||||| ||||||||||| |||||||||||||| || |||||||||||||||||
Sbjct 252 GGACGAATGGTATGGTGTCTCAACTGAACTAACACTCTTTAAAGATCCGTGGATCATCAA 311
Query 353 AAAGGTTTTTCACTTTGCTTC-AGTCTTGGATATGGCTCCCAACTCAGTCTCAAATACTC 411
||||||||||||||| |||| | || ||||||| | || | || | | |||||||
Sbjct 312 GAAGGTTTTTCACTTTTCTTCTA-TCATGGATAT-G----CATCCCA-T-T--AATACTC 361
Query 412 ATTGCTTGTTGGAC-ACG--GAGTCACCAGAAAACGCTGAAGAGAGTTTGGTCTCCCTGG 468
|||| |||||||| || ||||| |||||||| ||||||||||||||||||||||||
Sbjct 362 TTTGCCTGTTGGACGCCGTCGAGTCGTCAGAAAACCCTGAAGAGAGTTTGGTCTCCCTGG 421
Query 469 ATCTGTGTTTCTATGACAAAACATGGCCACATGATCCCAATGTTGCTTACAATAAACCAA 528
|||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 422 ATCTGTGTTTGTATGACAGAACATGGCCACATGATCCCAACGTTGCTTACAATAAACCAA 481
Query 529 CGTCCGAAGAAGCAATAAACCTGGCGTGGATGAGGACTATGTCGAA-GAGAGCAAGAAAA 587
|||||| |||| ||| ||||| |||||||||||||||| |||||| || ||||||||||
Sbjct 482 CGTCCGGAGAAAAAATGAACCTCGCGTGGATGAGGACTAAGTCGAATGA-AGCAAGAAAA 540
Query 588 GAAGAGGAGAAGTACTACGTCTCGACAGAACTAACTCTCCTCACCGTCGCTGACCCATGG 647
|||||||||| |||| ||||||| |||||||||||||||||||| ||| | || ||||||
Sbjct 541 GAAGAGGAGAGGTACAACGTCTCAACAGAACTAACTCTCCTCACGGTCACCGATCCATGG 600
Query 648 ACCTTGAAGATGGCAATGACCAAAAGCAGTATTGGCAACCTATACCGTCTTGTTCTAAAG 707
|||||||||| || |||||||||| ||||| ||||| | ||| | |||||||||||||||
Sbjct 601 ACCTTGAAGAAGGTAATGACCAAATGCAGTCTTGGCCATCTAAAACGTCTTGTTCTAAAG 660
Query 708 GCGAGCTTTGTAGACATCCACATTCTGAGATATCTCCCTTTGGATGATCAAATGATGGTC 767
| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 661 GAGAGCTTTGTACACATCCACATTCTGAGATATCTCCCTGTGGATGATCAAATGATGGTC 720
Query 768 AAAGAAGACTCTGGATTAGCAGTCGAGGTGTATGATCACGACACTGACTCTGTGCACAAT 827
|||||| |||||||||| ||||||| |||||||||||||||||||| ||| | ||||
Sbjct 721 CAAGAAGGCTCTGGATTAACAGTCGACGTGTATGATCACGACACTGATTCTACGTACAAG 780
Query 828 CTGGCTCTTAA-GAAATGGGCCAAATCTTCAAGCTTTGTTCTCGTCAGCGGATGGCGTAA 886
||| || |||| |||||||||||| | | |||| ||||||||| ||| |||||||| ||
Sbjct 781 CTG-CTTTTAAAGAAATGGGCCAAGTATCCAAGGTTTGTTCTCATCAACGGATGGCATAC 839
Query 887 GTGCTTTGTCGAC-AGAAGAGGTTTGCAGGTTGGCGATGTGATTGGAATGTATTGGGATC 945
|||||||||| || || ||||||||| || ||||||||||||||||||||||||||||
Sbjct 840 GTGCTTTGTC-ACCAGGAGAGGTTTGAAGAAAGGCGATGTGATTGGAATGTATTGGGATC 898
Query 946 GTTCTGAATCTAAGCTTCATTTTTGTGTGCTTTCTCGTTCCGAAACAATGGATTCAGCTC 1005
| |||||||||||| ||||||||||||||||||||||| | | |||||||||||||||
Sbjct 899 GATCTGAATCTAAGATTCATTTTTGTGTGCTTTCTCGTGC--AC-CAATGGATTCAGCTC 955
Query 1006 CTCTTCCTCCAAGTCCATAG 1025
|||||||||||||| |||||
Sbjct 956 CTCTTCCTCCAAGTACATAG 975
> Ahg347288 jgi|Araly1|347288|fgenesh1_pg.C_scaffold_5000680
Length=675
Score = 320 bits (173), Expect = 1e-86
Identities = 272/318 (86%), Gaps = 14/318 (4%)
Strand=Plus/Plus
Query 45 ATGAAGATGCCTCCTCCCTTTTCTGCGTCGAAGACT---CAATACTTGTTCCACGACGAG 101
|||||||||||| || ||||||||| | ||| ||| ||||||||| || ||||| |
Sbjct 1 ATGAAGATGCCT-CT--CTTTTCTGCATTGAAAACTCAACAATACTTG-TCTACGAC--G 54
Query 102 TCATCGGAAAACTCTAAAAAGAGTTTGGTCTCCACAACTCTTTCTTTGTCGTCTTGTGAA 161
||||| |||||| |||||||| ||||||||||||| ||||| | ||||||||||||||||
Sbjct 55 TCATCAGAAAACCCTAAAAAGTGTTTGGTCTCCACGACTCTCTGTTTGTCGTCTTGTGAA 114
Query 162 AACCCTAATAAGAGGAAGATGAACTCTGACGAAGTTCTCAATATTTCTTGCATACCAAGA 221
|||||||||||||||||||||||| || | || | || ||| ||||||||| ||||||
Sbjct 115 AACCCTAATAAGAGGAAGATGAACACTAATGATGATCCCAAGGTTTCTTGCAGACCAAGC 174
Query 222 GACTACAAATTAACACAA-GTAGAAAGAAAGATTGCACGAATGAGGAATCTCTCGTATC- 279
||| | |||| ||| ||| | ||||||||||||| |||||||||||| |||||| | |
Sbjct 175 GACGAAAAATCAAC-CAATGAAGAAAGAAAGATTAAACGAATGAGGAACCTCTCGAA-CG 232
Query 280 AAGAAAAGGCAGAGGACGAATGGTACGGTGTCTCAACAGAACTAACACTCTTCAAGGATC 339
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 233 AAGAAAAGGCAGAGGAAGAATGGTACGGTGTTTCAACAGAACTAACACTCTTCAAAGATC 292
Query 340 CGTGGATCATCAA-AAAG 356
| ||||||||||| ||||
Sbjct 293 CATGGATCATCAAGAAAG 310
> Ahg949018 jgi|Araly1|949018|scaffold_800905.1
Length=413
Score = 305 bits (165), Expect = 4e-82
Identities = 230/261 (88%), Gaps = 6/261 (2%)
Strand=Plus/Plus
Query 101 GTCATCGGAAAACTCTAAAAAGAGTTTGGTCTCCACAACTCTTTCTTTGTCGTCTTGTGA 160
||| ||||||||| |||| |||| |||||||||||| ||||| | ||||||||| ||| |
Sbjct 23 GTCGTCGGAAAACCCTAACAAGATTTTGGTCTCCACGACTCTATGTTTGTCGTCATGTAA 82
Query 161 AAACCCTAATAAGAGGAAGATGAACTCTGACGAAG-TTCTCAATATTTCTTGCATACCAA 219
|||||| ||||||||||||||||||||| || | | || || ||||||||| |||||
Sbjct 83 AAACCC---TAAGAGGAAGATGAACTCTGATGATGATCCT-AAGGTTTCTTGCAGACCAA 138
Query 220 GAGACTACAAATTAACACAAGTAGAAAGAAAGATTGCACGAATGAGGAATCTCTCGTATC 279
| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||
Sbjct 139 GCGACTACAAATTAACAAAAGAAGAAAGAAAGATTGCACGAATGAGGAATCTCTCGAATG 198
Query 280 AAGAAAAGGCAGAGGACGAATGGTACGGTGTCTCAACAGAACTAACACTCTTCAAG-GAT 338
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||
Sbjct 199 AAGAAAAGGCAGAGGACGAATGGTACGGTATCTCAACAGAACTAACACTTTTCAAAAGAT 258
Query 339 CCGTGGATCATCAAAAAGGTT 359
|| ||||||||||| ||||||
Sbjct 259 CCTTGGATCATCAAGAAGGTT 279
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46243098321
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5