BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G33730.1
Length=2523
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933960 jgi|Araly1|933960|scaffold_401948.1 3644 0.0
Ahg473025 jgi|Araly1|473025|fgenesh2_kg.1__2979__AT1G28180.1 176 7e-43
> Ahg933960 jgi|Araly1|933960|scaffold_401948.1
Length=2236
Score = 3644 bits (1973), Expect = 0.0
Identities = 2148/2234 (96%), Gaps = 6/2234 (0%)
Strand=Plus/Plus
Query 74 AATCTCCAGCTAACCACCGATGAAGCGAACAATCAACGAAGTCGTCGGATCTACCTCCGT 133
|||||||||| | ||||||||||||||| ||||||| ||||||||||||||||| |||||
Sbjct 2 AATCTCCAGCCACCCACCGATGAAGCGATCAATCAATGAAGTCGTCGGATCTACTTCCGT 61
Query 134 CAATACTCTCGATTCCTCCATTGCTAAGAAGCCTGTCTTCCTCACCAAAAAACAGCGGGA 193
||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||| ||
Sbjct 62 CAATACTCTCGATTCCTCCGTTGGTAAGAAGCCTGTCTTCCTCACCAAAGCTCAGCGCGA 121
Query 194 AGAGTTAGCCCTAAAACGCCGCCAGGATCAAATCTCCGAGCAACGTGTCCGTCGTGAGCA 253
||| |||||||||||||||| ||||||||||||||||||||||||||||| || || ||
Sbjct 122 AGAACTAGCCCTAAAACGCCGTCAGGATCAAATCTCCGAGCAACGTGTCCGCCGCGAACA 181
Query 254 ACTTGGTCGCCCCGAGCCCGAGACGGAAGATGTCTCCAATGGAGATACCAATCGGGATAA 313
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 182 GCTAGGTCGCCCCGAGCCCGAGACTGAAGATGTCTCCAATGGAGATACCAATCGGGATAA 241
Query 314 GGATcgagatagagatcgggaccgagaccgagaacgtgaccgagatagggagagagatag 373
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 242 GGATCGAGATAGAGATCGGGACCGAGACCGAGAACGTGACCGCGACAGGGAGAGAGATAG 301
Query 374 agggcgagatcgagaccgcgatagggatagagacagggatagggatagagagcgagagag 433
|||||||||||||||||||||||||||| || | ||||| |||||||||||||||||
Sbjct 302 AGGGCGAGATCGAGACCGCGATAGGGAT--AG--A--GATAGAGATAGAGAGCGAGAGAG 355
Query 434 agaCCGTGAGCGTGACCGTCGTGAACGAGATCGTGAACCGGATCGGAGAAATAGAGAAAA 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 356 AGACCGTGAGCGTGACCGTCGTGAACGAGATCGTGAACCGGATCGGAGAAATAGAGATAG 415
Query 494 GGAGAGGGAAGAGGAGGTTAAGGCTAGGGAGAAGGCGCGTGTTGAGAAATTAGTTGAGAG 553
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 416 GGAGAGGGAAGAGGAGGTTAAGGCTAGGGAGAAGGCGCGGGTTGAGAAATTAGTTGAGAG 475
Query 554 AGAGAAGGAGAAGGAACTTGACGCCATTAAAGAGCAGTATCTTGGAGGTAAGAAGCCGAA 613
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 AGAGAGGGAGAAGGAACTTGACGCCATTAAAGAGCAGTATCTTGGAGGTAAGAAGCCGAA 535
Query 614 GAAGAGAGTCATTAGGCCAAGCGAGAAGTTTCGTTTCTCTTTTGATTGGGAAAACACTGA 673
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 536 GAAGAGAGTCATTAGGCCCAGCGAGAAGTTTCGTTTCTCTTTCGATTGGGAAAACACTGA 595
Query 674 GGATACTTCTAGGGATATGAACGTTCTTTACCAAAACCCTCATGAAGCTCAGCTTCTCTT 733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 596 GGATACTTCTAGGGATATGAACGTTCTTTACCAAAACCCTCATGAAGCTCAGCTTCTGTT 655
Query 734 TGGGAGAGGGTTTCGTGCTGGTATGGACCGTCGTGAGCAGAAGAAACAAGCGGCTAAGCA 793
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 656 TGGGAGAGGGTTTCGTGCTGGTATGGACCGTCGTGAGCAGAAGAAACAAGCGGCCAAGCA 715
Query 794 TGAGAAAGAGATGCGAGACGAGATTCGTAAGAAAGATGGTATTGTAGAGAAACCAGAGGA 853
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 716 TGAGAAAGAGATGCGAGACGAGATTCGTAAGAAAGATGGTATTGTAGAGAGACCTGAGGA 775
Query 854 AGCTGCTGCTCAGAGAGTGAGAGAAGAAGCTGCTGATACTTATGACTCGTTTGATATGAG 913
||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 776 AGCGGCTGCTCAGAGAGTTCGAGAAGAAGCTGCGGATACTTATGACTCGTTTGATATGAG 835
Query 914 GGTTGACAGGCATTGGAGTGATAAGAGATTAGAGGAGATGACTGAAAGGGATTGGCGTAT 973
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 836 GGTTGATAGGCATTGGAGCGATAAGAGATTAGAGGAGATGACTGAAAGGGATTGGCGTAT 895
Query 974 TTTCAGAGAAGATTTCAATATCTCTTACAAGGGTTCGAGGATTCCTCGTCCGATGAGGAG 1033
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 896 TTTCAGAGAAGATTTCAATATCTCTTACAAGGGTTCGAGGATTCCTCGTCCAATGAGGAG 955
Query 1034 CTGGGAAGAGAGTAAGCTTACTTCTGAGCTTTTGAAAGCTGTGGAGAGAGCTGGATACAA 1093
|||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 956 CTGGGAAGAGAGCAAGCTCACTTCTGAGCTTTTGAAAGCTGTAGAGAGAGCTGGATACAA 1015
Query 1094 GAAACCTTCTCCTATTCAAATGGCAGCTATACCACTTGGACTGCAACAGCGTGATGTTAT 1153
|||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1016 GAAACCTTCTCCAATTCAAATGGCTGCTATACCTCTTGGACTGCAACAGCGTGATGTTAT 1075
Query 1154 CGGCATTGCAGAGACTGGTTCTGGTAAGACTGCTGCTTTTGTTTTACCCATGTTAGCTTA 1213
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1076 CGGCATTGCAGAGACTGGTTCTGGTAAGACTGCTGCTTTTGTTTTGCCTATGTTAGCTTA 1135
Query 1214 CATCTCTAGATTGCCACCGATGAGCGAAGAGAATGAGACTGAGGGGCCTTATGCTGTTGT 1273
|||||||||||||||||||||||||||||||||||||||||| || || |||||||||||
Sbjct 1136 CATCTCTAGATTGCCACCGATGAGCGAAGAGAATGAGACTGAAGGACCGTATGCTGTTGT 1195
Query 1274 TATGGCCCCTACTAGAGAGCTTGCTCAGCAGATTGAGGAGGAAACTGTTAAGTTTGCGCA 1333
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 TATGGCCCCTACTAGGGAGCTTGCTCAGCAGATTGAGGAGGAAACTGTTAAGTTTGCGCA 1255
Query 1334 TTATCTAGGGTTTAGGGTGACTTCTATTGTGGGTGGTCAGTCGATTGAGGAACAGGGGTT 1393
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1256 TTATCTAGGGTTTAGGGTGACTTCTATTGTAGGTGGTCAGTCGATTGAGGAACAGGGGTT 1315
Query 1394 GAAGATAACACAAGGGTGTGAGATTGTGATTGCTACTCCGGGTCGTCTGATTGATTGCCT 1453
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1316 GAAGATAACACAAGGGTGTGAGATTGTGATTGCTACTCCAGGTCGTCTGATTGATTGCCT 1375
Query 1454 TGAGAGGCGTTATGCGGTGTTGAACCAGTGTAACTATGTGGTTCTTGATGAGGCAGATCG 1513
||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1376 TGAGAGGCGGTATGCGGTGTTGAATCAGTGTAACTACGTGGTTCTTGATGAGGCAGATCG 1435
Query 1514 GATGATTGACATGGGTTTCGAGCCACAGGTTGCAGGTGTGTTAGATGCGATGCCTTCAAG 1573
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1436 GATGATAGACATGGGTTTCGAGCCACAGGTTGCAGGTGTGTTAGATGCGATGCCTTCAAG 1495
Query 1574 TAATTTGAAACCTGAGAACGAAGAAGAAGAGCTTGATGAAAAGAAGATTTATAGAACTAC 1633
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||
Sbjct 1496 TAATTTGAAACCTGAGAACGAAGAAGAAGAGCTTGATGAAAAGAAAATTTACAGAACCAC 1555
Query 1634 ATATATGTTTAGTGCTACAATGCCTCCTGGGGTAGAGCGGCTAGCTCGGAAGTACTTGAG 1693
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1556 ATATATGTTTAGTGCTACAATGCCTCCTGGGGTAGAGCGGCTAGCTAGGAAGTACTTGAG 1615
Query 1694 GAACCCGGTTGTTGTCACCATTGGTACTGCTGGAAAGACTACGGATTTGATTTCGCAACA 1753
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1616 GAACCCGGTTGTTGTCACCATTGGTACTGCAGGAAAGACCACGGATTTGATTTCGCAACA 1675
Query 1754 TGTTATTATGATGAAAGAATCAGAGAAATTCTTCAGATTGCAGAAACTGCTCGATGAGCT 1813
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1676 CGTTATTATGATGAAAGAATCAGAGAAATTCTTCAGATTGCAGAAACTGCTCGATGAGCT 1735
Query 1814 CGGCGAGAAGACTGCCATTGTGTTTGTTAACACAAAGAAAAATTGTGACTCGATTGCTAA 1873
|||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1736 CGGCGATAAAACTGCCATTGTGTTTGTTAACACAAAGAAAAATTGTGACTCTATTGCTAA 1795
Query 1874 GAATCTGGATAAGGCAGGGTACCGTGTCACGACCTTGCACGGTGGGAAATCACAAGAGCA 1933
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1796 GAATCTTGATAAGGCAGGGTACCGTGTCACGACCTTGCACGGTGGGAAATCGCAAGAGCA 1855
Query 1934 GAGAGAAATCAGCTTAGAAGGATTCAGAGCAAAGAGATACAACGTTCTTGTTGCAACAGA 1993
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1856 GAGAGAGATCAGCTTAGAAGGATTCAGAGCAAAGAGATACAACGTTCTTGTTGCAACAGA 1915
Query 1994 TGTTGTAGGACGTGGAATTGATATTCCGGATGTGGCTCATGTCATAAACTACGACATGCC 2053
||||||||| |||||||| |||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1916 TGTTGTAGGTCGTGGAATCGATATTCCAGATGTGGCTCACGTCATAAACTACGACATGCC 1975
Query 2054 TAAACATATAGAGATGTACACACATCGTATCGGACGTACAGGACGTGCTGGGAAAAGTGG 2113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1976 TAAACATATAGAGATGTACACACATCGTATCGGACGTACAGGACGTGCTGGGAAAAGTGG 2035
Query 2114 TGTTGCGACTTCGTTCTTGACACTTCATGATACCGAAGTCTTCTATGATCTGAAGCAGAT 2173
|||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||
Sbjct 2036 TGTTGCGACTTCGTTCTTAACTCTTCATGATACAGAAGTCTTCTATGATCTGAAGCAGAT 2095
Query 2174 GCTTGTTCAGAGCAACAGTGCGGTGCCTCCTGAGCTGGCGAGACATGAAGCGTCCAGATT 2233
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2096 GCTTGTTCAGAGCAACAGTGCGGTGCCTCCTGAGCTGGCGAGACATGAAGCATCCAGATT 2155
Query 2234 CAAACCAGGTACGGTTCCTGATAGACCCCCAAGACATAGTGACACTGTCTATATAAATTG 2293
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2156 CAAACCAGGTACGGTTCCTGATAGACCCCCAAGACATAGTGACACTGTTTATATAAATTG 2215
Query 2294 AGTCGATAGGCTCT 2307
||||||||||||||
Sbjct 2216 AGTCGATAGGCTCT 2229
> Ahg473025 jgi|Araly1|473025|fgenesh2_kg.1__2979__AT1G28180.1
Length=1916
Score = 176 bits (95), Expect = 7e-43
Identities = 211/264 (80%), Gaps = 20/264 (8%)
Strand=Plus/Plus
Query 534 GTTGAGAAATTAGTTG-AGAGAGAGAAGGAGAAGGA-ACTTGACGCCATTAAAGAGCAGT 591
||||||||||||| | || | || | ||||| || | || ||||||| |||||||| |
Sbjct 270 GTTGAGAAATTAG-AGAAGCTAAAGCACGAGAAAGAGA-TTAACGCCATGAAAGAGCAAT 327
Query 592 ATCTT-GGAGGTAAGAAGCCGAAGAAGAGAGTCAT--T-AGGCCAAGCGAGAAGTTT-CG 646
| ||| ||| || ||| || || ||||||||||| | | ||| ||| |||| ||| ||
Sbjct 328 A-CTTAGGATCTACGAAACCTAATAAGAGAGTCATCATCAAGCCGAGCAAGAA-TTTCCG 385
Query 647 TTTCTCTTTTGATTGGGAAAACACTGAGGATACTTCTA--GG-GATATGAACGTTCTTTA 703
|| || |||||||| |||||||| |||||||| | || |||||||| ||||| ||
Sbjct 386 -TT-TC----GATTGGGAGAACACTGAAGATACTTCGAGTGGAGATATGAATGTTCTCTA 439
Query 704 CCAAAACCCTCATGAAGCTCAGCTTCTCTTTGGGAGAGGGTTTCGTGCTGGTATGGACCG 763
||||||||||||||||||||||||||| ||||||||||||||||| || || || |||||
Sbjct 440 CCAAAACCCTCATGAAGCTCAGCTTCTGTTTGGGAGAGGGTTTCGCGCGGGAATAGACCG 499
Query 764 TCGTGAGCAGAAGAAACAAGCGGC 787
||||||||||| |||| || |||
Sbjct 500 CCGTGAGCAGAAAAAACTAGTGGC 523
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95111341765
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5