BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G33735.1
Length=670
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482322 jgi|Araly1|482322|fgenesh2_kg.4__1382__AT2G33735.1 859 0.0
> Ahg482322 jgi|Araly1|482322|fgenesh2_kg.4__1382__AT2G33735.1
Length=642
Score = 859 bits (465), Expect = 0.0
Identities = 596/655 (91%), Gaps = 26/655 (4%)
Strand=Plus/Plus
Query 1 AAATCGTAAATTTGAGGAAGCTTGGAATCGTTTGTTTGCTCT-G-GAGAATGTGGTGTTC 58
|||| || |||||||||||||||| ||||||||||| || | | |||||||||||||||
Sbjct 1 AAATTGTGAATTTGAGGAAGCTTGAAATCGTTTGTTCGCAGTAGAGAGAATGTGGTGTTC 60
Query 59 CGATTGGGGAGACAGCCATGGCTTCGATTTTTTCGATTTCGAGGATTACAAGGATCACTA 118
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 61 CGATTGGGGAGACGGCCATGGCTTCGATTTTTTCGATTTCGAGAATTACAAGGATCACTA 120
Query 119 TAAAGTTCTGGAATTGAACTGTGACGCTTCTGATGATGAGATTCGTTCCAGCTTTATCCG 178
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 121 TAAAGTTCTTGAATTGAACTGTGACGCTTCTGATGATGAAATTCGTTCCAGCTTTATCCG 180
Query 179 TCTTGCTCTGAAATGGCATCCGGACAAATTTAAAGAAGAGGATTCTGCTACGTCTAGGTT 238
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 181 TCTTGCACTGAAATGGCATCCGGATAAATTTAAAGAAGAGGATTCTGCTACGTCTAGGTT 240
Query 239 TCAAGAAATCAACGAGGCTTATCAAGTGTTGAGCGACCCAATTGCAAGGCAGGAGTACGA 298
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 241 TCAAGAAATCAACGAGGCTTATCAAGTGTTGAGCGACCCAATTACAAGGCAGGAGTACGA 300
Query 299 TAAGAAAAGGATGCGTCGTATCTATGAGCACAACACGGAACTATTGAATGAGTACAAGGA 358
||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 301 CAAGAAAAGGATGCGTCGTATCTATGAGAACAACATGGAACTATTGAATGAGTACAAGGA 360
Query 359 GCTCATATTGACTTGCAATGGCCTTGGGGTGAAGCATTATCTTTGGTAATTGCTTAACTA 418
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 361 GCTCATATTGACTTGCAATGGCCTTGGGATGAAGCATTATCTTTGGTAATTGCTAAACTA 420
Query 419 AGATTAGGTGATATGTATAGATTATACGATGAATTAGCATATTTAGCAGGGTTGAGTTTA 478
|||||||||||||||||||| || || |||| |||||||| || ||||||||||| ||||
Sbjct 421 AGATTAGGTGATATGTATAGCTTGTATGATGGATTAGCAT-TT-AGCAGGGTTGAATTTA 478
Query 479 GGAACATCAGCATTTAAGCAGGGTTATGTTTTGAG---A---G--CATCAATTAGAA-CG 529
|| |||| ||||||||||||||||| ||||||||| | | |||||||||| | |
Sbjct 479 GGGACATTAGCATTTAAGCAGGGTTGTGTTTTGAGTGGATAAGAGCATCAATTAGCATC- 537
Query 530 AATCAGGTTTTAGTTTCTCTGCTTCCACAAAAAACATTTTGTC-GTCT-CCTTAGCAACC 587
||||||||||| ||||||||||||||||||||| |||||||| |||| ||| ||||| |
Sbjct 538 AATCAGGTTTTTGTTTCTCTGCTTCCACAAAAACCATTTTGTTTGTCTTCCT-AGCAATC 596
Query 588 ATTATATCAGTTTTCAACTTTATCTGAACATTGATGTCGAAGATAATCGGTTTCG 642
||||||||||||| | | | |||||||||||||||||| ||||||||||
Sbjct 597 ATTATATCAGTTT-CTA----A----AACATTGATGTCGAAGATGATCGGTTTCG 642
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24589281465
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5