BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G33740.2
Length=758
Score E
Sequences producing significant alignments: (Bits) Value
Ahg901193 jgi|Araly1|901193|Al_scaffold_0004_1843 837 0.0
> Ahg901193 jgi|Araly1|901193|Al_scaffold_0004_1843
Length=549
Score = 837 bits (453), Expect = 0.0
Identities = 517/549 (94%), Gaps = 0/549 (0%)
Strand=Plus/Plus
Query 10 ATGGCTTCGTCTCTCACCACTAGATTATCGGCGGTAATCGGATCTCGACGGAGTTTTCCG 69
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTTCGTCTCTGTGCACTAGAGTATCGGCGGTAATCGGATCTCGACGGAGTTTTCCG 60
Query 70 ATCGTCGGAGCGTTTTGCGTTCTGTCAActctctcaatctcttctctttcttcttcatct 129
|||||||| ||||||||||| |||||||||||||||||||||||||||||||| || |||
Sbjct 61 ATCGTCGGCGCGTTTTGCGTGCTGTCAACTCTCTCAATCTCTTCTCTTTCTTCGTCTTCT 120
Query 130 cCCTTCAAATCGGGTTGTGCACAGTCTTTCTCTGTTGTTCCTCTCTTAAGGTCTAAGTTT 189
||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 121 TCCTTCAAATCGGGTTGTGCACAGTCCTTCTCTGTTGTTCCTCTCTTAAGGTCGAAGTTT 180
Query 190 AGCAGTAAGGCTTTTTCTTCGTCGATCAGAATGGAGGAGAGCAGCAAAACTGTGCCCAGC 249
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AGTAGTAAGGCTTTTTCTTCGTCGATCAGAATGGAGGAGAGCAGCAAAACTGTGCCCAGC 240
Query 250 ATTGTTGTCTATGTCACTGTTCCTAACAGAGAAGCAGGGAAGAAGTTGGCTAACAGCATT 309
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 241 ATTGTTGTCTATGTCACTGTTCCTAACAGAGAAGCAGGAAAGAAGTTGGCTAACAGCATA 300
Query 310 GTCCAGGAAAAGCTTGCAGCGTGTGTGAACATTGTGCCTGGCATTGAATCGGTGTACGAG 369
||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 301 GTCCAAGAAAAGCTTGCAGCGTGTGTGAACATTGTGCCAGGCATTGAATCGGTATACGAA 360
Query 370 TGGGAGGGGAAGGTTCAGAGTGATTCAGAGGAGCTCCTGATAATCAAAACAAGGCAATCC 429
||||||||||||||||||||||| || ||||||||||| ||||| ||||||||||||||
Sbjct 361 TGGGAGGGGAAGGTTCAGAGTGACTCCGAGGAGCTCCTAATAATTAAAACAAGGCAATCT 420
Query 430 CTTCTAGAACCTCTAACCGAGCATGTCAATGCAAATCACGAATACGATGTGCCAGAAGTA 489
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CTTCTTGAGTCTCTAACCGAGCATGTCAATGCAAATCACGAATACGATGTGCCAGAAGTA 480
Query 490 ATTGCGTTGCCCATCACTGGTGGGAGCGACAAGTATTTAGAATGGTTGAAAAACAGTACA 549
||||| |||| || ||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 481 ATTGCAATGCCGATAACTGGTGGGAGCGACAAGTATCTAGAATGGTTGAAAAACAGTTCA 540
Query 550 AGGAACTGA 558
|||||||||
Sbjct 541 AGGAACTGA 549
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27944098161
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5