BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G33750.1
Length=1077
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933963 jgi|Araly1|933963|scaffold_401951.1 1563 0.0
> Ahg933963 jgi|Araly1|933963|scaffold_401951.1
Length=1122
Score = 1563 bits (846), Expect = 0.0
Identities = 1005/1082 (93%), Gaps = 10/1082 (1%)
Strand=Plus/Plus
Query 1 ATGAAGATGAAGACAGTTCTTGTAATCATAAACTGTATATTCTTGGCCATTGGAAACTGT 60
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 24 ATGAATATGAAGACCGTTCTTGTAATCATAAACTGTATATTCTTGGCCATTGGAAACTGT 83
Query 61 GGAGGCCCTCTAATGATGCGTCTCTACTTCCA-AAATGGTGGCGAAAGGATCTGGTTTC- 118
||||||||||| ||||||||||||||||| || || |||||| ||||||| ||| |||
Sbjct 84 GGAGGCCCTCTTATGATGCGTCTCTACTT-CAGTAACGGTGGCCAAAGGATTTGG-TTCT 141
Query 119 CAAGCTTCCTTCAAACCGTTGGTTGTCCACTCATTTTCTTCCCTCTTCTCTTATCTTTCC 178
|||||||||| |||||||| |||||||| ||||| |||||||||||||||| || |||
Sbjct 142 CAAGCTTCCTCCAAACCGTAGGTTGTCCCCTCATCCTCTTCCCTCTTCTCTTCTCCTTCA 201
Query 179 TCCGCCGTCGTCGTTGCCTTGAAGAACAAGAAACGACTCCATTTTTCCTCATGAAACCTC 238
||||||||| |||||||||||| |||||||||| ||| ||||||||||||||||||||||
Sbjct 202 TCCGCCGTCTTCGTTGCCTTGACGAACAAGAAATGACCCCATTTTTCCTCATGAAACCTC 261
Query 239 CTCTCTTTATCGCCGCTATCGTTGTTGGTTTGCTCGTGGGATTTGACAATTACCTCTACT 298
||||||| || ||||||||| | |||||| ||||| |||| |||||||||||||| ||||
Sbjct 262 CTCTCTTCATGGCCGCTATCCTCGTTGGTCTGCTCATGGGCTTTGACAATTACCTTTACT 321
Query 299 CTTACGGGTTAGCTTATATCCCTGTTTCTACTGCGTCTTTGATCATCTCCGCGCAATTAG 358
||||||| ||||||||||| |||||||| ||||| ||| |||||||||| ||||||||||
Sbjct 322 CTTACGGATTAGCTTATATTCCTGTTTCCACTGCTTCTCTGATCATCTCTGCGCAATTAG 381
Query 359 GCTTCACTGCTCTCTTTGCATTTTTTATGGTGAAGCAAAAGTTCACACCTTTCACTATAA 418
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 382 GCTTCACTGCTCTCTTTGCCTTTTTTATGGTAAAGCAAAAGTTCACACCTTTCACTATAA 441
Query 419 ACGCTATCGTTTTGCTCACTGGTGGTGCCGTAGTCCTTGCCCTTAACTCTGATAGTGACA 478
||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 442 ACGCTGTCGTTTTGCTCACTGTTGGTGCCGTTGTCCTTGCCCTTAACTCTGATAGTGACA 501
Query 479 AGCTTGCAAACGAGACACACAAGGAATATGTTGTTGGG-TTCATCATGACTC-TTGGTGC 536
||||||||||||||||||||||||| || ||||||||| ||| ||||||| | |||||||
Sbjct 502 AGCTTGCAAACGAGACACACAAGGAGTACGTTGTTGGGTTTC-TCATGAC-CATTGGTGC 559
Query 537 AGCTCTTCTCTATGGGTTTATATTGCCACTTGTCGAGCTTTCTTACAAGAAATCTGGTCA 596
|||||||||||||| |||||||||||| ||||| |||||| |||||||||||||| ||||
Sbjct 560 AGCTCTTCTCTATGCGTTTATATTGCCGCTTGTGGAGCTTACTTACAAGAAATCTTGTCA 619
Query 597 GCGAATCACGTATACGCTCGCGCTCGAGTTCCAGATGGTCTTATGCTTTGCTGCCACTTG 656
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 620 ACGAATCACGTATACGCTCGCGCTCGAGTTCCAGATGGTCTTGTGCTTTTTTGCCACTTG 679
Query 657 -TGTCTGCCTCGTGGGGATGCTAGCCGCTGGCGATTTCAAGGTAAAACATGCTTTGTTTA 715
| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 680 CT-TCTGCCTCGTGGGAATGCTAGCTGCTGGCGATTTCAAGGTAAAACATGCTTTGTTTA 738
Query 716 TTTTCAAGAATAGGGTGATAGCAGGAGAAGCAAGAGATTTTAAGCTTGGAGAGTCTTTGT 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 739 TTTTCAAGAATAGGGTGATAGCAGGAGAAGCAAGAGATTTTAAGCTTGGAGAGTCTTTGT 798
Query 776 ACTATGTGGTGATTGTGTTCACGGCCATAATCTGGCAAGCATTTTTTGTGGGAGCTATTG 835
||||||||||| |||||||||| ||| ||||||||||||||||||| |||||||||||||
Sbjct 799 ACTATGTGGTGGTTGTGTTCACCGCCGTAATCTGGCAAGCATTTTTCGTGGGAGCTATTG 858
Query 836 GGTTGATCTTCTGTGCATCGTCTCTGGTCTCTGGAATTATGGTCAGTGCTCTGCTTCCGG 895
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 859 GGTTGATCTTCTGTGCATCTTCTCTGGTCTCTGGAATTATGATCAGTGCTCTGCTTCCGG 918
Query 896 TGACGGTGATCTTGGCCGTCATTTGCTTCCAGGAGAAGTTTCAGGCGGGGAAAGGTGTCG 955
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 919 TGACGGTGATCTTGGCCGTCATTTGTTTCCAGGAGAAGTTTCAGGCGGGGAAAGGTGTCG 978
Query 956 CTTTGGCTCTCTCCCTCTGGGGATCAGTCTCTTATTTCTATGGACAGGTTAAATCCGAGG 1015
||||||||||||| ||||||||||| |||||||| |||||||||||| | ||||||||||
Sbjct 979 CTTTGGCTCTCTCGCTCTGGGGATCCGTCTCTTACTTCTATGGACAGATGAAATCCGAGG 1038
Query 1016 AGAAGACTAAGGCTCAGGATACACAACTGTCTCAGCTTCCAGTTACTGATTATGTAGCTT 1075
||||||||||||||||||| ||||||||||||||||||||||||||||||| || | |||
Sbjct 1039 AGAAGACTAAGGCTCAGGAGACACAACTGTCTCAGCTTCCAGTTACTGATTCTGAAACTT 1098
Query 1076 AA 1077
||
Sbjct 1099 AA 1100
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40105308684
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5