BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G33775.1

Length=801
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg933966 jgi|Araly1|933966|scaffold_401954.1                        628    1e-179


> Ahg933966 jgi|Araly1|933966|scaffold_401954.1
Length=373

 Score =  628 bits (340),  Expect = 1e-179
 Identities = 362/373 (97%), Gaps = 0/373 (0%)
 Strand=Plus/Plus

Query  102  AACAAAACAAAGAAAACCAAATGGGTATCAAGATCTTGTTGATCCTTGGCCTCTTGACCC  161
            |||||||||||||||||||||||||||| ||| |||||||||| |||||||||||| |||
Sbjct  1    AACAAAACAAAGAAAACCAAATGGGTATTAAGTTCTTGTTGATTCTTGGCCTCTTGGCCC  60

Query  162  TGGCTGTAGTCGCCGAGTCAGCCAATGCCACATGGACCCTTACCAAATCTTGTGTCAATG  221
            |||| |||||||||||||| |||||||||||||||||||| |||||||| ||||||||||
Sbjct  61   TGGCCGTAGTCGCCGAGTCTGCCAATGCCACATGGACCCTGACCAAATCCTGTGTCAATG  120

Query  222  GCCAAGGTTGCATTGGAGAGGATGGTGAGCTTGACTACTTGATGGATTCTGAGACCAACC  281
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  GCCAAGGTTGCATTGGAGAGGATGGTGAGCTTGACTACTTGATGGATTCTGAGACCAACC  180

Query  282  GGCGCCAACTAGCCGCGAGGCGCAGCTACATCAGTTACGGTGCTCTCAGGAAGAACAATG  341
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  GGCGCCAACTAGCCGCGAGGCGCAGCTACATCAGTTACGGTGCTCTCAGGAAGAACAATG  240

Query  342  TGCCGTGCAGCCGACGTGGCCGGTCTTACTACGATTGCAAGAAGAGGAAAAGGGCTAACC  401
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  241  TGCCGTGCAGCCGACGTGGCCGGTCTTACTATGATTGCAAGAAGAGGAAAAGGGCTAACC  300

Query  402  CTTACAGACGTGGCTGCAGCGTCATCACGCATTGCTACAGGCAAACTTCTTAATTTCGGG  461
            |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct  301  CTTACAGACGTGGCTGCAGCGTAATCACGCATTGCTACAGGCAAACTTCTTAATTTCGAG  360

Query  462  AAGCATTTATACA  474
            |||||||||||||
Sbjct  361  AAGCATTTATACA  373



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29583383592


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5