BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G33780.1
Length=783
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482330 jgi|Araly1|482330|fgenesh2_kg.4__1390__AT2G33780.1 691 0.0
> Ahg482330 jgi|Araly1|482330|fgenesh2_kg.4__1390__AT2G33780.1
Length=641
Score = 691 bits (374), Expect = 0.0
Identities = 570/659 (86%), Gaps = 35/659 (5%)
Strand=Plus/Plus
Query 76 ATGGAGAAATCACCAAGATACAGAGATAAAGCAAAGAACTTGCTTCCTTCACCAAGCAGC 135
|||||||| ||||||||||||| |||| | ||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGAATTCACCAAGATACAAAGATGACGCAAAGAACTTGCTTCCTTCACCAAGCAGC 60
Query 136 TGCACCACTACACCGACCAGA-TACGTTAAAG--ACGA-CATGTAT-GAAACCACTTTCA 190
||||||||||| ||||||||| | | ||| | || | |||| || || ||||||||||
Sbjct 61 TGCACCACTACTCCGACCAGACT-CTTTAGATCCACCAACATG-ATTGACACCACTTTCA 118
Query 191 TCCGAACCGATCCTTCTTCCTTCAAGCAAGTCGTCCAACTGCTCACCGGAATCCCCAAGA 250
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 119 TCCGAACCGATCCTTCTTCCTTCAAACAAGTCGTCCAACTGCTCACCGGAATCTCCAAGA 178
Query 251 ACCCGACCCACCAACCCGACCCGAGATTTCCT-CCTTTTCACTCAATCCCTCCGATCAAA 309
|||| ||||||||||||||||||||||| || ||||| ||||| |||||||||||||||
Sbjct 179 CCCCGCCCCACCAACCCGACCCGAGATTTTCTTCCTTT-CACTCTATCCCTCCGATCAAA 237
Query 310 GCCGTGACC-AACAAGAAACAATCTTCGTCCTTCCGACTCTCCGAACGTCGCAACTCGAT 368
|||| ||| |||||||||||| |||| |||||||| |||| |||||||||| | |||||
Sbjct 238 TCCGT-ACCCAACAAGAAACAAGCTTCTTCCTTCCGCCTCTACGAACGTCGCGATTCGAT 296
Query 369 GAAGCATTATCTCAACATCAACCCGACCCA-TTCCGGGCCACCCGAGATTCTCACTCCCA 427
|||||| |||||||| |||||||||||| | ||||||| ||| ||| ||| | |||||
Sbjct 297 GAAGCACTATCTCAAGATCAACCCGACC-AGTTCCGGGTTACCTGAGGTTC-C-CTCCCC 353
Query 428 C--CATCTTGAATTTTCCGGCTCTCGATCTCAGCCCTGACACTCCTCTCATGTCTGATCC 485
| ||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 354 CGGCATCTTGGATTTTCCGGCTCTGGCTCTCAGCCCTGACACTCCTCTCATGTCTGATCC 413
Query 486 GTTTTATCGA-CCGGGGTCTTT---T-AG--TCAGAGCCCTAGTGATTCGAAACCGAGCT 538
|||| ||||| |||| ||| | | || |||||||||||||||| ||||||||||||
Sbjct 414 GTTTCATCGATCCGGA-TCTCTGAGTCAGACTCAGAGCCCTAGTGATCCGAAACCGAGCT 472
Query 539 TCGATGATGACCAAGAAAGATCGATCAAGGAGAAAGGGTTTTATTTGCGCCCGTCACCGT 598
||||||||| |||| ||| ||||||||||||||||||| ||||||| ||| |||||||
Sbjct 473 CCGATGATGAAGAAGAGAGAGCGATCAAGGAGAAAGGGTTCTATTTGCACCCATCACCGT 532
Query 599 CGACAACTCCGAGGGATACGGAGCCTCGACTTCTCTCTCTCTTTCCGATGACTCCGATTC 658
|||||||||||||| |||||||||| ||||||||| ||||||||||| ||||| ||| ||
Sbjct 533 CGACAACTCCGAGGAATACGGAGCCCCGACTTCTCACTCTCTTTCCGGTGACTTCGACTC 592
Query 659 ACTCGCCGGCGCCTTCACCTCATGATCATTGATCAACCCTAGTTTTGCTTTTGTTTTAT 717
||| |||| | | | ||||||||||||| | | || ||||||||| ||||||||||
Sbjct 593 ACTTGCCG-C-CAT-CACCTCATGATCA---A-C--CC-TAGTTTTGCCTTTGTTTTAT 641
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28897171086
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5