BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G33790.1
Length=1055
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482331 jgi|Araly1|482331|fgenesh2_kg.4__1391__AT2G33790.1 1038 0.0
> Ahg482331 jgi|Araly1|482331|fgenesh2_kg.4__1391__AT2G33790.1
Length=938
Score = 1038 bits (562), Expect = 0.0
Identities = 686/745 (92%), Gaps = 11/745 (1%)
Strand=Plus/Plus
Query 17 AAAAACAAAAGAACAAAGATGGGAATCATTGGTAAGAGTGTTTCTCTAACTCTCTTTGCA 76
||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 1 AAAAACAAAAGAATAAAGATGGGAATCATTGGTAAGTGTGTTTCTCTAACTCTCTTAGCA 60
Query 77 CTTTTGTGCTTCACTTCCTCTGTTTTCACCTTAGGAGTGAATCAACCTGGTTCATCAGAT 136
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTTTTATGCTTCACTTCCTCTGTTTTCACCTTAGGAGTGAATCAACCTGGTTCATCAGAT 120
Query 137 CCCTTCCATAGCCTTCCCCAACACCTTCCCCTACCTCCAATCAAACTACCAACTCTTCCA 196
||||||||||||| |||||| ||||||||| ||||||| ||||||||||||| || |||
Sbjct 121 CCCTTCCATAGCCATCCCCATCACCTTCCCATACCTCCCATCAAACTACCAAAACTCCCA 180
Query 197 CCGGCCAAAGCTCCCATCAAACTACCAGCCTACCCACCAGCCAAAGCTCCGATCAAGCTA 256
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 181 CCGGCCAAAGCTCCCATCAAACTACCAGTCTACCCACCAGCCAAAGCTCCGATCAAACTA 240
Query 257 CCAACTCTCCCACCAGCCAAAGCTCCGATTAAGTTACCAACTCTCCCACCGATCAAACCT 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CCAACTCTCCCACCAGCCAAAGCTCCGATTAAGTTACCAACTCTCCCACCGATCAAACCT 300
Query 317 CCTGTTCTCCCACCAGTTTACCCTCCTAAGTACAACAAGACCCTAGTGGCAGTTAGAGGT 376
|| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 301 CCAGTTCTCCCACCAGTTTACCCTCCTAAGTACAACAAGACCCTAGTGGCCGTTCGAGGT 360
Query 377 GTGGTCTACTGCAAAGCTTGCAAGTACGCGGGCGTCAACAACGTCCAAGGCGCTAAACCC 436
||||||||||||||||| |||||||| ||||||||||||||| || || | |||
Sbjct 361 GTGGTCTACTGCAAAGCCTGCAAGTATGCGGGCGTCAACAACATC-AA------A--CCC 411
Query 437 GTTAAAGATGCGGTGGTGAGACTTGTGTGCAAGAACAAGAAGAACTCAATATCGGAGACA 496
|||||||||||||||||||||||||||||||||||||| |||||| || |||||||||||
Sbjct 412 GTTAAAGATGCGGTGGTGAGACTTGTGTGCAAGAACAACAAGAACCCAGTATCGGAGACA 471
Query 497 AAGACGGACAAGAACGGATACTTCATGCTCCTGGCCCCTAAGACGGTGACCAACTACGAT 556
|||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 472 AAGACGGACACGAAGGGATACTTCATGCTCTTGGCCCCTAAGACGGTGACCAACTACGAT 531
Query 557 ATCAAAGGTTGTCGAGCTTTCCTCGTGAAGTCTCCAGACACCAAGTGCAGCAAAGTGTCG 616
|||||| ||| |||||||||||||||||||| || ||| |||| ||||||||||||||
Sbjct 532 ATCAAAAATTGCCGAGCTTTCCTCGTGAAGTCGCCGGACGCCAAATGCAGCAAAGTGTCA 591
Query 617 TCACTCCACGATGGAGGCAAGGGCTCCGTTCTAAAGCCGGTCTTGAAACCAGGATTTTCC 676
| || | | |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 ACGTTCAATGGTGGATACAAGGGCTCCGTTCTAAAGCCGGTCTTGAAACCAGGATTTTCC 651
Query 677 TC-GACCATCATGAGATGGTTCAAGTACAGTGTGTACAACGTTGGTCCATTCGCATTCGA 735
|| | | ||||| | | |||||||||| |||| ||||||||||||||||||||||||||
Sbjct 652 TCAGTC-ATCATCAAAAAGTTCAAGTACGGTGTTTACAACGTTGGTCCATTCGCATTCGA 710
Query 736 ACCTACCTGCCCCAAATGAGATGGT 760
|||||||||||||||||||||||||
Sbjct 711 ACCTACCTGCCCCAAATGAGATGGT 735
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39266604510
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5