BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G33793.1
Length=1401
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933974 jgi|Araly1|933974|scaffold_401962.1 1138 0.0
Ahg899500 jgi|Araly1|899500|Al_scaffold_0004_150 322 5e-87
Ahg932171 jgi|Araly1|932171|scaffold_400159.1 289 5e-77
Ahg901205 jgi|Araly1|901205|Al_scaffold_0004_1855 278 1e-73
> Ahg933974 jgi|Araly1|933974|scaffold_401962.1
Length=679
Score = 1138 bits (616), Expect = 0.0
Identities = 659/680 (97%), Gaps = 1/680 (0%)
Strand=Plus/Plus
Query 94 CTCTCTAAGTTTCGTCTGCAATGTCGTCTACCAGAAGAGGCACTAAGAGAACTCGGCCAG 153
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTCTCTCAGTTTCGTCTACAATGTCGTCTACCAGAAGAGGCACTAAGAGAACTCGGCCAG 60
Query 154 AGCCGCCGCAATCGCTCAAGAAGCCAACACCGAAAGCAAAACTCCCGGACGAATTGGATG 213
||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||
Sbjct 61 AGCCGCCGCAATCGCTCAAGAAGCCAACACCGAAAGCGAAACTCCAGGACGATTTGGATG 120
Query 214 TCGATGTTTCTAGCGATTTCAAAGGAATCATGTCGGCGTTGCAGCAATTCAGAGAGAAAG 273
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 121 TCGATGTTTCTAGCGATTTCAAAGGAATCATGTCGGCGTTGCAGCAATTCAGAGAGAAGG 180
Query 274 CGCACGAAGATGGCCGTAAGAAGAAGGAAGAAAGCATTTCCAGTGTGTCCACTGAGGTGA 333
|||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||
Sbjct 181 CGCACGAAGATGGCCGGAAGAAGAAGGAAGAGAGCATTTCCAGTGTCTCCACTGAGGTGA 240
Query 334 AGTCAAAGATTGACGAGCTGAAGTCAAAACTTGAGAAAGAAAGACAAAACTTTTCCAAAG 393
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 241 AGTCAAAGATTGACGAGCTGAAGTCAAAACTTGAGAAAGAAAGACAAAACTTTGCCAAAG 300
Query 394 CACTTTCAAAGAGTTCAAAGGAGTGTGAGAATATTTTGAAGGATGAAGCTGCCAAGTTTG 453
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 301 CACTTTCAAAGAGTTCAAAGGAGTGTGAGAATATCTTGAAGGATGAATCTGCCAAGTTTG 360
Query 454 AGGAGCTTCATAAGAAATTCGTGAAAGACAAAGCTGATCATCTACAAGGCTTGAAAGACA 513
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 361 AGGAGCTTCATAAGAAATTCGTGAAAGACAAAGCTGATCATCTACAGGGTTTGAAAGACA 420
Query 514 CTATTTCAAAGTTTGAGGAGGACAAGGAGAGGCTCTACATGCGATATGAGCAGCTAAGGA 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CTATTTCAAAGTTTGAGGAGGACAAGGAGAGGCTCTACATGCGATATGAGCAGCTAAGGA 480
Query 574 AGAAGGAGAAGACAATGATAACGGAACAGGAGAAGTTCTGCACTGAAAAGCTTGCTCAAT 633
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 481 AGAAGGAGAAGACAATGATAACAGAACAGGAGAAGTTCTGCACTGAAAAGCTTGCTCAAT 540
Query 634 TGGAAGAGTCACTGAAGAAAAAGAAACGGGGTGACAAAACTTTCAGCATACTGAGGAAAA 693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TGGAAGAGTCACTGAAGAAAAAGAAACGGGGTGACAAAACTTTCAGCATACTGAGGAAAA 600
Query 694 CTCTCGGCTCTTTTCTGGAAAACGAGGCTTCTGATGAGGAATTCCCACCTGATGAGTGAA 753
||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||
Sbjct 601 CTCTCGGCTCTTTTCTGGAGAACGAAGCTTCTGATGAAGAATTCCCACCTGATGAGTGAA 660
Query 754 AGATTAACGTCTTTTTCACT 773
|||| ||||||| || ||||
Sbjct 661 AGATCAACGTCTCTT-CACT 679
> Ahg899500 jgi|Araly1|899500|Al_scaffold_0004_150
Length=486
Score = 322 bits (174), Expect = 5e-87
Identities = 236/265 (89%), Gaps = 7/265 (3%)
Strand=Plus/Minus
Query 896 TCACAAGAAC-TGGATTTGGAACTTAGATGAACGTATGGGCAGAGCAAGAAGGTGATTAA 954
|||||||||| | |||||| || ||||||||| || ||||||||||||||||||||| |
Sbjct 486 TCACAAGAACAT-GATTTGTAATTTAGATGAAAGTCCGGGCAGAGCAAGAAGGTGATTGA 428
Query 955 TGAGTTGCTGTTTCTTGTTATCATCATCAGCATCAATTTCGACTTTCATCACTTGAAGAA 1014
||||| || |||| ||||||||| | |||||||||||| ||||||| |||||||||||
Sbjct 427 TGAGTCGCAGTTTGTTGTTATCA-C--GAGCATCAATTTCCACTTTCAGCACTTGAAGAA 371
Query 1015 ACCGCATTTCCCGCAAAAAGCACGTCACTTGTCTGAGCTCTCTATCACGTCCTCTATACC 1074
|| ||||||||| ||||||||||||||||||||||| ||||||||||||||| ||| |||
Sbjct 370 ACTGCATTTCCCTCAAAAAGCACGTCACTTGTCTGACCTCTCTATCACGTCCACTAAACC 311
Query 1075 CATATATCTCCAACACCTTCACTTCATTTCGATCAATGAAGACTCCCTGATTACTTACAC 1134
|||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||
Sbjct 310 CATATATCTCCAACACCTTCACTTCATTTCGATCAATGCAGAGTCCCTGACTACTTACAC 251
Query 1135 AGTGCAAGCCCATCACA-AAG-AGA 1157
||||||||||| | ||| ||| |||
Sbjct 250 AGTGCAAGCCCTTAACAGAAGCAGA 226
> Ahg932171 jgi|Araly1|932171|scaffold_400159.1
Length=550
Score = 289 bits (156), Expect = 5e-77
Identities = 197/216 (91%), Gaps = 5/216 (2%)
Strand=Plus/Plus
Query 195 CTCCCGGACGAATT-GGATGTCGATGTTTCTAGCGATTTCAAAGGAATCATGTCGGCGTT 253
|||| ||||| ||| |||||| |||||| ||||||| |||||| |||||||||||||||
Sbjct 75 CTCCAGGACG-ATTCCGATGTCAATGTTTTTAGCGATCTCAAAGAAATCATGTCGGCGTT 133
Query 254 GCAGCAATTCAGAGAGAAAGCGCACGAAGATGGCCGTAAGAAGAAGGAAGAAAGCATTTC 313
||||||| |||||||||||||||||||||||| ||| ||| |||||||||| ||||| ||
Sbjct 134 GCAGCAAATCAGAGAGAAAGCGCACGAAGATGCCCGGAAGCAGAAGGAAGAGAGCATCTC 193
Query 314 CAGTGTGTCCACTGAGGTGAAGTCAAAGATTGACGAGCTGAAGTCAAAACTTGAGAAAGA 373
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 194 CAGTGTCTCCACTGAGGTGAAGTCAAAGATTGACGAGCTGAAGTCAAAACTTGAGAAAGA 253
Query 374 AAGACAAAACTTTT-CCAAAGCACTTTCAAA-GAGT 407
||||||||| ||| |||||||||||||||| ||||
Sbjct 254 AAGACAAAA-TTTCGCCAAAGCACTTTCAAATGAGT 288
Score = 274 bits (148), Expect = 1e-72
Identities = 183/199 (92%), Gaps = 5/199 (3%)
Strand=Plus/Plus
Query 571 GGAAGAAGGAGAAGACAATGATAACGGAACAGGAGAAGTTCTGCACTGAAAAGCTTGCTC 630
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 349 GGAAGAAGGAGGAGACAATGATAACGGAACACGAGAAGTTCTGCACTGAAAAGCTTGCTC 408
Query 631 AATTGGAAGAGTCACTGAAGAAAAAGAAACGGGGTGAC-AAAACTTTCAGCATACTGAGG 689
||||||||||||| |||||||||||||||| || |||| |||| ||||| ||||||||||
Sbjct 409 AATTGGAAGAGTCCCTGAAGAAAAAGAAACTGGATGACGAAAA-TTTCACCATACTGAGG 467
Query 690 AAAACTCTCGGCTCTTTTCTGGAAAACGAGGCTTCTGATGAGGAATTCCCACCTGATGAG 749
||||||||||||||||||||||| ||||| || |||||||| |||| |||||||||||||
Sbjct 468 AAAACTCTCGGCTCTTTTCTGGAGAACGAAGCCTCTGATGAAGAATACCCACCTGATGAG 527
Query 750 TGAAAGAT--T-AACGTCT 765
|||||||| | |||||||
Sbjct 528 TGAAAGATCGTTAACGTCT 546
Score = 132 bits (71), Expect = 8e-30
Identities = 75/77 (97%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 94 CTCTCTAAGTTTCGTCTGCAATGTCGTCTACCAGAAGAGGCACTAAGAGAACTCGGCCAG 153
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1 CTCTCTAAGTTTCGTCTGCAATGTCGTCTACCAGAAGAGGCAGTAAGAGAACTCGGCCAG 60
Query 154 AGCCGCCGCAATCGCTC 170
| |||||||||||||||
Sbjct 61 ATCCGCCGCAATCGCTC 77
> Ahg901205 jgi|Araly1|901205|Al_scaffold_0004_1855
Length=264
Score = 278 bits (150), Expect = 1e-73
Identities = 186/203 (92%), Gaps = 3/203 (1%)
Strand=Plus/Minus
Query 918 TTAGATGAACGTATGGGCAGAGCAAGAAGGTGATTAATGAGTTGCTGTTTCTTGTTATCA 977
|||||||||||| |||||||||||||||||||||| |||||| || ||||||||||||||
Sbjct 242 TTAGATGAACGTCTGGGCAGAGCAAGAAGGTGATTGATGAGTCGCAGTTTCTTGTTATCA 183
Query 978 TCATCAGCATCAATTTCGACTTTCATCACTTGAAGAAACCGCATTTCCCGCAAAAAGCAC 1037
| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 182 -C--CAGCATCAATTTCGACTTTCATCACTTGAAGAAACTGCATTTCCCGCAGAAAGCAC 126
Query 1038 GTCACTTGTCTGAGCTCTCTATCACGTCCTCTATACCCATATATCTCCAACACCTTCACT 1097
||||||| ||||| |||| |||||||||| ||| |||||| |||||||||||||||||||
Sbjct 125 GTCACTTCTCTGACCTCTTTATCACGTCCACTAAACCCATGTATCTCCAACACCTTCACT 66
Query 1098 TCATTTCGATCAATGAAGACTCC 1120
||||||||||||||| ||| |||
Sbjct 65 TCATTTCGATCAATGCAGAGTCC 43
Score = 69.4 bits (37), Expect = 7e-11
Identities = 41/43 (95%), Gaps = 0/43 (0%)
Strand=Plus/Minus
Query 1166 CATACAGAGTTAGGATTGTACGTAATACTTGACGCGGAAGCAT 1208
|||||||||||||||||||||||||||||||||| | ||||||
Sbjct 43 CATACAGAGTTAGGATTGTACGTAATACTTGACGTGCAAGCAT 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52374086875
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5