BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G33796.1

Length=330
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg899500 jgi|Araly1|899500|Al_scaffold_0004_150                     313    6e-85
  Ahg901205 jgi|Araly1|901205|Al_scaffold_0004_1855                    278    2e-74


> Ahg899500 jgi|Araly1|899500|Al_scaffold_0004_150
Length=486

 Score =  313 bits (169),  Expect = 6e-85
 Identities = 222/247 (90%), Gaps = 5/247 (2%)
 Strand=Plus/Plus

Query  3    GGGCTTGCACTGTGTAAGTAATCAGGGAGTCTTCATTGATCGAAATGAAGTGAAGGTGTT  62
            |||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||
Sbjct  240  GGGCTTGCACTGTGTAAGTAGTCAGGGACTCTGCATTGATCGAAATGAAGTGAAGGTGTT  299

Query  63   GGAGATATATGGGTATAGAGGACGTGATAGAGAGCTCAGACAAGTGACGTGCTTTTTGCG  122
            |||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||| |
Sbjct  300  GGAGATATATGGGTTTAGTGGACGTGATAGAGAGGTCAGACAAGTGACGTGCTTTTTGAG  359

Query  123  GGAAATGCGGTTTCTTCAAGTGATGAAAGTCGAAATTGATGCTGATGATGATAACAAGAA  182
            |||||||| ||||||||||||| ||||||| ||||||||||||   | ||||||||| ||
Sbjct  360  GGAAATGCAGTTTCTTCAAGTGCTGAAAGTGGAAATTGATGCTC--G-TGATAACAACAA  416

Query  183  ACAGCAACTCATTAATCACCTTCTTGCTCTGCCCATACGTTCATCTAAGTTCCAAATCCA  242
            || || |||||| |||||||||||||||||||||  || ||||||||| || |||||| |
Sbjct  417  ACTGCGACTCATCAATCACCTTCTTGCTCTGCCCGGACTTTCATCTAAATTACAAATC-A  475

Query  243  -GTTCTT  248
             ||||||
Sbjct  476  TGTTCTT  482


> Ahg901205 jgi|Araly1|901205|Al_scaffold_0004_1855
Length=264

 Score =  278 bits (150),  Expect = 2e-74
 Identities = 186/203 (92%), Gaps = 3/203 (1%)
 Strand=Plus/Plus

Query  28   GGAGTCTTCATTGATCGAAATGAAGTGAAGGTGTTGGAGATATATGGGTATAGAGGACGT  87
            ||| ||| |||||||||||||||||||||||||||||||||| |||||| ||| ||||||
Sbjct  43   GGACTCTGCATTGATCGAAATGAAGTGAAGGTGTTGGAGATACATGGGTTTAGTGGACGT  102

Query  88   GATAGAGAGCTCAGACAAGTGACGTGCTTTTTGCGGGAAATGCGGTTTCTTCAAGTGATG  147
            |||| |||| ||||| |||||||||||||| |||||||||||| ||||||||||||||||
Sbjct  103  GATAAAGAGGTCAGAGAAGTGACGTGCTTTCTGCGGGAAATGCAGTTTCTTCAAGTGATG  162

Query  148  AAAGTCGAAATTGATGCTGATGATGATAACAAGAAACAGCAACTCATTAATCACCTTCTT  207
            |||||||||||||||||||  | |||||||||||||| || |||||| ||||||||||||
Sbjct  163  AAAGTCGAAATTGATGCTG--G-TGATAACAAGAAACTGCGACTCATCAATCACCTTCTT  219

Query  208  GCTCTGCCCATACGTTCATCTAA  230
            |||||||||| ||||||||||||
Sbjct  220  GCTCTGCCCAGACGTTCATCTAA  242



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11675610234


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5