BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G33800.1
Length=1143
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482332 jgi|Araly1|482332|fgenesh2_kg.4__1392__AT2G33800.1 1779 0.0
Ahg343774 jgi|Araly1|343774|fgenesh1_pg.C_scaffold_4000116 701 0.0
> Ahg482332 jgi|Araly1|482332|fgenesh2_kg.4__1392__AT2G33800.1
Length=1136
Score = 1779 bits (963), Expect = 0.0
Identities = 1084/1141 (95%), Gaps = 13/1141 (1%)
Strand=Plus/Plus
Query 10 TCTGGTGCTGGATAAGCCTTTTGCTTCATTCTCACTTCCTTCCTCATCCAAAAAAGCTCC 69
||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||
Sbjct 1 TCTGGTGCTGGATAAGCCTTTTGCTTCGTTCTCACTTCCTTCCTCATCC-AAAAAG--CC 57
Query 70 TCCA-TTTCAATGGCGACAGCATCAGctctctcatcactctcttcactctcactccacac 128
|||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 58 TCCATTTTCAATGGCGACAGCATCAGCTCTCTCTTCACTCTCTTCTCTCTCACTCCACAC 117
Query 129 ccg-a--acctcttctctcatctcctcttcctccacaaaatccatcgtctctttctcctc 185
||| | |||||||||||||||||||| |||||||||||| |||||||||| ||||||||
Sbjct 118 CCGAACCACCTCTTCTCTCATCTCCTCCTCCTCCACAAAACCCATCGTCTCCTTCTCCTC 177
Query 186 cttcctcAACCGCCGCTTCTCATCTCTCACTCTCGTCAAAGCCTCATCGACCGATACCGA 245
|||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 178 CTTCCTCAACCGCCGCGTCTCATCTCTCACTCTCGTCAAAGCCTCATCGAACGAAACCGA 237
Query 246 AACCATCTTCTTCGAAGACGAAACACCAGAAATAACCGCAAATGTCGTCTTCGACCCACC 305
||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 238 AACTTTCTTCTTCGAAGACGAAACCCCAGAAATAACCGCCAATGTCGTCTTCGACCCACC 297
Query 306 AATTGCTCCCGAAGGATTCGTCTCTCCTCCGTATTTCGACGAAGGAAGCGACGAGACAGA 365
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 298 AGTTGCTCCCGAAGGATTCGTCGCTCCTCCGTATTTCGACGAAGGAAGCGACGAGACAGA 357
Query 366 GGAAGAGATCGCTACCGCTTTTGAAGAGCTCTATGGACCTGCGTATAGTGGTGAGAGTAT 425
|||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 358 GGAAGAGATCGCGACGGCTTTTGAAGAGCTCTATGGTCCTGCGTATAGTGGTGAGAGTAT 417
Query 426 GCTTGGGAAAGATATTTATGTGATGGACTCAAAGCATAAGAAGAGTTCAGGTATTGGTGG 485
|||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 418 GCTTGGGAAAGACATTTATGTGATGGATTCGAAGCATAAGAAGAGTTCAGGTATTGGTGG 477
Query 486 GAAGCCAAAGAAAGATAAGATTAGAGATGGGTTTGAAGAGAGAGTTGTGCAAGTTAGGAG 545
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 GAAGCTGAAGAAAGATAAGATTAGAGATGGGTTTGAAGAGAGAGTTGTGCAAGTTAGGAG 537
Query 546 AGTGACTAAGGTTGTTAAAGGAGGGAAGCAATTGAAGTTTAGAGCTATCGTTGTTGTTGG 605
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 538 AGTGACTAAGGTTGTTAAAGGTGGGAAGCAATTGAAGTTTAGAGCTATTGTTGTTGTTGG 597
Query 606 TGATAAACAAGGGAATGTTGGTGTTGGTTGTGCTAAGGCTAAAGAAGTTGTTGCTGCTGT 665
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 TGATAAGCAGGGGAATGTTGGTGTTGGTTGTGCTAAGGCTAAAGAAGTTGTTGCTGCTGT 657
Query 666 TCAGAAATCTGCTATTGATGCTAGGAGAAACATTGTTCAAGTTCCTATGACTAAGTATTC 725
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 658 TCAGAAATCTGCCATTGATGCTAGGAGAAACATTGTTCAAGTTCCTATGACTAAGTACTC 717
Query 726 TACTTTCCCTCACAGATCAGAGGGTGATTATGGAGCAGCCAAGGTGATGCTTAGACCTGC 785
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 718 TACTTTCCCCCACAGATCGGAGGGTGATTATGGAGCAGCCAAGGTGATGCTTAGACCGGC 777
Query 786 TTCACCAGGTACTGGTGTGATTGCTGGAGGAGCGGTTAGGATTGTGCTAGAGATGGCAGG 845
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 778 TTCACCAGGTACTGGTGTGATTGCTGGAGGAGCGGTCAGGATCGTGCTAGAGATGGCAGG 837
Query 846 AGTCGAGAATGCATTGGGGAAACAGCTTGGAAGCAACAATGCTCTCAACAATGCGAGAGC 905
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 838 AGTCGAGAATGCATTGGGGAAACAGCTCGGAAGCAACAATGCTCTCAACAATGCGAGAGC 897
Query 906 CACTCTTGCAGCAGTACAACAGATGAGACAGTTCCGCGATGTTGCACAAGAGCGTGGAAT 965
||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 898 CACTCTTGCGGCAGTGCAACAGATGAGACAGTTCCGCGATGTTGCTCAAGAGCGTGGAAT 957
Query 966 CCCCATGGAAGAACTCTGGAAGTGAAAACTCATCTTCGCTTTAACATTTTCATCCTCTTT 1025
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 CCCCATGGAAGAACTCTGGAAGTGAAAACTCATCTTCGCTTTAACATTTTCATCCTCTTT 1017
Query 1026 TGTTGAGATTTCTTGTAA--TGATGTAATTCATGAGAAAA-TATGTTTATTTTGAAATAG 1082
|||||||||| ||||||| | |||||||||||||||||| |||||||||||||||||||
Sbjct 1018 TGTTGAGATT-CTTGTAAAATTATGTAATTCATGAGAAAAATATGTTTATTTTGAAATAG 1076
Query 1083 TAAATCCTTTCTTCTCCCATAAAAGTTCACA-TTGACCGATTCTATTTCAGAATGCTATA 1141
|||||||||||||| ||| |||||||| || |||||| |||||||| ||||||||||||
Sbjct 1077 CAAATCCTTTCTTCTTCCACAAAAGTTC-CAATTGACCAATTCTATTACAGAATGCTATA 1135
Query 1142 G 1142
|
Sbjct 1136 G 1136
> Ahg343774 jgi|Araly1|343774|fgenesh1_pg.C_scaffold_4000116
Length=675
Score = 701 bits (379), Expect = 0.0
Identities = 441/469 (94%), Gaps = 12/469 (3%)
Strand=Plus/Plus
Query 522 AGAGAGAGTTGTGCAAGTTAGGAGAGTGACTAAGGTTGTTAAAGGAGGGAAGCAATTGAA 581
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 219 AGAGAGAGTTGTGCAAGTTAGGAGAGTGACTAAGGTTGTTAAAGGTGGGAAGCAATTGAA 278
Query 582 GTTTAGAGCTATCGTTGTTGTTGGTGATAAACAAGGGAATGTTGGTGTTGGTTGTGCTAA 641
|||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 279 GTTTAGAGCTATTGTTGTTGTTGGTGATAAACAGGGGAATGTTCGTGTTGGTTGTGCTAA 338
Query 642 GGCTAAAGAAGTTGTTGCTGCTGTTCAGAAATCTGCTATTGATGCTAGGAGAAACATTGT 701
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 339 GGCTAAAGAAGTTGTTGCTGCTGTTCAGAAATCTGCCATTGATGCTAGGAGAAACATTGT 398
Query 702 TCAAGTTCCTATGACTAAGTATTCTACTTTCCCTCACAGATCAGAGGGTGATTATGGAGC 761
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 399 TCAAGTTCCTATGACTAAGTACTCCACTTTCCCTCACAGATCAGAGGGTGATTATGGAGC 458
Query 762 AGCCAAGGTGATGCTTAGACCTGCTTCACCAGGTACTGGTGTGATTGCTGGAGGAGCGGT 821
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 459 AGCCAAGGTGATGCTTAGACCGGCTTCACCAGGTACTGGTCTGATTGCTGGAGGAGCGGT 518
Query 822 TAGGATTGTGCTAGAGATGGCAGGAGTCGAGAATGCATTGGGGAAACAGCTTGGAAGCAA 881
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 519 CAGGATCGTGCTAGAGATGGCAGGAGTCGAGAATGCATTGGGGAAACAGCTCGGAAGCAA 578
Query 882 CAATGCTCTCAACAATGCGAGAGCCACTCTTGCAGCAGTACAACAGATGAGACAGTTCCG 941
|||||| | |||||||||||||| ||||| ||||||||||||||||||||
Sbjct 579 CAATGC----------G--AGAGCCACTCTTGCGGCAGTGCAACAGATGAGACAGTTCCG 626
Query 942 CGATGTTGCACAAGAGCGTGGAATCCCCATGGAAGAACTCTGGAAGTGA 990
||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 627 CGATGTTGCTCAAGAGCGTGGAATCCCCATGGAAGAACTCTGCAAGTGA 675
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42621421206
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5