BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G33810.1
Length=981
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482334 jgi|Araly1|482334|fgenesh2_kg.4__1394__AT2G33810.1 1369 0.0
> Ahg482334 jgi|Araly1|482334|fgenesh2_kg.4__1394__AT2G33810.1
Length=959
Score = 1369 bits (741), Expect = 0.0
Identities = 869/928 (94%), Gaps = 20/928 (2%)
Strand=Plus/Plus
Query 65 CTGGGTCCTCGTCAGGTTTTAAGGATACATATGTATGCATGTATGCATATACAAAATAAT 124
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 41 CTGGGTCCTCGTCAGGTTTTAAGGATACATATGTATTCATGTATGCATATACAAAATAAT 100
Query 125 AGAGCACTAAAGCTTGTTCGTACTCTTTTTTACACAACATGCTAATAATTTTTATACCTT 184
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 101 AGAGCACTAAAGCTTGTTCGTACTTTTTTTTACAGAACATGCTAATAATTTTTATACCTT 160
Query 185 AGGAGTGAAATTTTAGTGGTCCAACAACTTAAGCACCTAAGATCCTTCCCCACTTTTGTT 244
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 161 AGGAGTGAAAATTTAGTGGTCCAACAACTTAAGCACCTAAGATCCTTCCCCACTTTTGTT 220
Query 245 TGGGGCTCCTTTATATCTCTTCCAATGGTTACTTTTAC-T--TC--C-TCTTCTTCTCTT 298
||||||||||||||||||||||||||| |||||| ||| | || | ||||||||||||
Sbjct 221 TGGGGCTCCTTTATATCTCTTCCAATGTTTACTTGTACTTCCTCTTCGTCTTCTTCTCTT 280
Query 299 CTTGTTCCATCTTTCATGT----GAGAGAGAGAGTTGAATTTTGCAGATGAGTATgagaa 354
|||||||| |||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 281 CTTGTTCCCTCTTTCATGTGAGAGAGAGAGAGAGTTGAAATTTGCAGATGAGTATGAGAA 340
Query 355 gaagcaaagcggaagggaagaggagcttacgagaactgagtgaggaagaggaagaagaag 414
|||||||||||||||| |||||||| |||| |||| ||||||||||||||| || || |
Sbjct 341 GAAGCAAAGCGGAAGGTAAGAGGAGTTTACAAGAAATGAGTGAGGAAGAGG-AG--GACG 397
Query 415 aagaaactgaagatgaagatacttttgaagaagaagaggctttggagaagaagcagaaag 474
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 398 AAGAAACAGAAGATGAAGATACTTTTGAAGAAGAAGAGGCTTTGGAGAAGAAGCAGAAAG 457
Query 475 GTAAAGCTACAAGTAGTAGTGGAGTTTGTCAGGTCGAGAGTTGTACCGCGGATATGAGCA 534
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 458 CTAAAGCTACAAGTAGTAGTGGAGTTTGTCAGGTCGAGAGTTGTACCGCGGATATGAGCA 517
Query 535 AAGCCAAACAGTACCACAAACGACACAAAGTCTGCCAGTTTCATGCCAAAGCTCCTCATG 594
| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||
Sbjct 518 AGGCCAAACAGTACCACAAACGACATAAAGTCTGCGAGTTTCATGCCAAAGCTCCTCTTG 577
Query 595 TTCGGATCTCTGGTCTTCACCAACGTTTCTGCCAACAATGCAGCAGGTTTCACGCGCTCA 654
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 578 TTCGGATCTATGGTCTTCACCAACGTTTCTGCCAACAATGCAGCAGGTTTCACGAGCTCA 637
Query 655 GTGAGTTTGATGAAGCCAAGCGGAGTTGCAGGAGACGCTTAGCTGGACACAACGAGAGAA 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 638 GTGAGTTTGATGAAGCCAAGCGGAGTTGCAGGAGACGCTTAGCTGGACACAACGAGAGAA 697
Query 715 GGCGGAAAAGCACAACTGACTAAAGACGGTGAAACGTGTGAGATCCCGGTTTGAAGGTTA 774
||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||
Sbjct 698 GGCGGAAAAGCACAACTGAATAAAGACGGTGAAAGGTGTGAGATCCCAATTTGAAGGTTA 757
Query 775 ATGAAACAGGCTTTGCTTACTCTCTTCTGTCAGTCTCTTTTAGCTCCTTGTAATCCTCTG 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 758 ATGAAACAGGCTTTGCTTACTCTCTTCTGTCAGTCTCTTTTAGCTCCTTGTAATCCTCTG 817
Query 835 TGTCTCTGTCTGTTTCTCCATATTACCTGTAATCAAAGCTATCTGCTAAACCTACGACAT 894
||| || ||| |||| | |||||||||| |||||||||||||||||||||||| |||||
Sbjct 818 TGTATCC-TCTCTTTC-C-ATATTACCTGCAATCAAAGCTATCTGCTAAACCTATGACAT 874
Query 895 GGTTAAATAAATGCATTGAGACTT-AGTAAATGCTTGAAGAAATTATGTGTAATAACTCT 953
| ||||||||||||||| |||||| | |||||| || ||| ||| |||||||| | || |
Sbjct 875 GATTAAATAAATGCATTAAGACTTGA-TAAATGGTTCAAGGAAT-ATGTGTAAGA-CTGT 931
Query 954 TTAAACTTGTCAAATGTTATTTCAAGCC 981
||||||||| |||||||||||||||||
Sbjct 932 TTAAACTTGGAAAATGTTATTTCAAGCC 959
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36445508652
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5