BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G33830.2
Length=676
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482337 jgi|Araly1|482337|fgenesh2_kg.4__1397__AT2G33830.2 765 0.0
> Ahg482337 jgi|Araly1|482337|fgenesh2_kg.4__1397__AT2G33830.2
Length=609
Score = 765 bits (414), Expect = 0.0
Identities = 560/625 (90%), Gaps = 32/625 (5%)
Strand=Plus/Plus
Query 12 TACTTCACACTTGACACAATTCTATCCAAAATCAA-CCC-a--aa-a-a-aaGAAAGAAA 64
||||||||||||||||||||||||||||||||||| ||| | || | | |||||| |||
Sbjct 1 TACTTCACACTTGACACAATTCTATCCAAAATCAACCCCAAGCAATACAGAAGAAAAAAA 60
Query 65 TATGTGGGATGAAACTGTAGCCGGACCTAAACCGGAGCATGGCCTTGGCCGCCTCCGCAA 124
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 61 GATGTGGGATGAAACTGTAGCCGGACCTAAGCCGGAGCATGGCCTTGGCCGTCTCCGCAA 120
Query 125 TAAGATCACCACCCAACCCCTTGACATCAAAGGTGTAGGAGAAGGGAGCAGTAGTAAAAC 184
||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 121 TAATATCACCGCCCAACCCCTTGACATCAAAGGTGTAGGAGAAGGGAGCAGTAGCAAAAC 180
Query 185 TGTGGCGGCGGTGGCCGGG-AGTCCTGGAACTCCGACGACGCCAGGATCGGCGCGTAAGG 243
||||||||| || | |||| ||||| || ||||||||||| |||||||||||||||||||
Sbjct 181 TGTGGCGGCAGTTG-CGGGAAGTCCCGGGACTCCGACGACACCAGGATCGGCGCGTAAGG 239
Query 244 AAAACGTGTGGAGAAGTGTGTTTCATCCAGGAAGTAACATCGCCACTAGAGGAATGGGCA 303
| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 240 AGAACGTGTGGAGAAGTGTGTTTCATCCAGGAAGTAACATCGCCACCAGAGGAATGGGAA 299
Query 304 CAAACCTCTTCGACAAGCCTTCTCACCCAAACTCTCCCACCGTCTACGATTGGCTATACA 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CAAACCTCTTCGACAAGCCTTCTCACCCAAACTCTCCCACCGTCTACGATTGGCTATACA 359
Query 364 GCGACGACACTAGGAGCAAGCACCGTTGAGCCGA-GAGGGTAGAGTGACATGAGAATGAT 422
||||||| |||||||||||||||||||||||||| |||| ||||||||||| || ||||
Sbjct 360 GCGACGATACTAGGAGCAAGCACCGTTGAGCCGATGAGGACAGAGTGACATGCGAGTGAT 419
Query 423 GTAAAATAATTATGTTCTTTACGCCACGTGTTTATGTTCTGTTTCGTCTATTTTGGCTAT 482
|| |||| | ||||||||||||||||||||||| |||||||||||| |
Sbjct 420 GTCAAAT---------C-----GCCACGTGTTTATGTTCTGTTTCTTCTATTTTGGCTGT 465
Query 483 ATGT-GCAATCTTTTATTTG-CTTCATGTCGTTTG-TGT-T---TGTTAGTGACCGTTGA 535
|| | |||||||||||||| |||| |||||||| | | | ||||||||||||||||
Sbjct 466 AT-TCGCAATCTTTTATTTTACTTCTTGTCGTTTAATTTGTGGATGTTAGTGACCGTTGA 524
Query 536 TTTCCACCATCTGGGTTAGTTTTTAGCTTTTAACGGTGGCGATGCGTCTTCAGTGTCTTG 595
| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 525 TCTCCACCATCTGGGTTGGTTTTTAACTTTTAACGGTGGCGATGCGTCTTCAGTGTCTTG 584
Query 596 TAATATTTTTACTGTTCGGTAATAT 620
|||| ||| |||||||| |||||||
Sbjct 585 TAATGTTTCTACTGTTCTGTAATAT 609
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24818018967
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5