BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G33835.1
Length=2256
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933983 jgi|Araly1|933983|scaffold_401971.1 2809 0.0
> Ahg933983 jgi|Araly1|933983|scaffold_401971.1
Length=1815
Score = 2809 bits (1521), Expect = 0.0
Identities = 1725/1821 (95%), Gaps = 23/1821 (1%)
Strand=Plus/Plus
Query 116 CCTCGCCGAAGACTTCAAGATGTCTGATTCCGACATGGACATTGATGATGATGAGGTCGA 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2 CCTCGCCGAAGACTTCAAGATGTCTGATTCCGACATGGACATTGATGATGATGAGGTCGA 61
Query 176 ACAAAAGGTGCAAGTACATACAATTGTAAGAGAATCTGAATTGTTTGATAAACCACCAAT 235
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 62 ACAAAAGGTGCAAGTACATACAATTGTAAGAGAATCTGAATTGCTTGATAAACCACCAAT 121
Query 236 TCAAGCTTCCAATTCCCACAACGATGTGAAGAGGCATTCTGTAACAACACCTTTAGATGA 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 TCAAGCTTCCAATTCCCACAACGATGTGAAGAGGCATTCTGTAACAACACCTTTAGATGA 181
Query 296 GCAATCAAAAATCATAAAGGAGCAAGCTTTTGCTCAAGATAATGGTACTTTACCAAGATT 355
||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||
Sbjct 182 GCAATCAAAAATCATAAAGGAACAAGCTTTTGCTCAATATAATGGTACTTTATCAAGATT 241
Query 356 TCCTGCTCCGGGTATACCGCCAAGAAGCTTTTTCACTGGCGGTGGTGGGAATGAACCAGA 415
|||||||||||||||||| |||| |||||||||| ||||||||| ||||||||||||||
Sbjct 242 TCCTGCTCCGGGTATACCACCAAAAAGCTTTTTCCCTGGCGGTGAAGGGAATGAACCAGA 301
Query 416 ACAAAAACGTGCAGCTCTTCCCTGCAAATTTTTTGCTAAAGGGTGGTGTTTCAATGGGGT 475
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 302 ACAAAAACGTGCAGCTCTTCCCTGCAAGTTTTTTGCTAAAGGGTGGTGTTTCAACGGGGT 361
Query 476 GTCCTGCAAGTTTCTACATGTGAAAGAGAATTCAAATTGCACTAGTCAACAACTGGCGGA 535
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 362 GTCCTGCAAGTTTCTACATGTGAAAGAGAATTCAAATTGCATTAGTCAACAACTGGCGGA 421
Query 536 AAATAGTATGGCTGGAAACGGTGGTATCCGGTCTGATCTAGAAAGAAGAATTTTGGACAG 595
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 422 AAATAGTATGGCTGGAAACGGTGGTATCCGGTCTGATCTAGAAAGAAGAATTTCGGACAG 481
Query 596 CAGAGAAGGTGTAAGAGTTTCCCAGTTAAGCGAAAACGGTGTGACATCGTTGCCTACCAG 655
|| ||||||||||||| |||||||||||||||||||||| ||||||| |||| ||||||
Sbjct 482 CAAAGAAGGTGTAAGATTTTCCCAGTTAAGCGAAAACGGCATGACATCTTTGCATACCAG 541
Query 656 AGAGGATATATCTTTCATGAAT----C-----CTCAGAGAGTTTTCTCCTCCATGTCTTT 706
| | |||||||||||| ||||| | ||||||||||||||||||||||||||||
Sbjct 542 AAATGATATATCTTTCGTGAATCCCCCAGGTTCTCAGAGAGTTTTCTCCTCCATGTCTTT 601
Query 707 TGTGAATCCCCCAGGTTCTCAGAGAGTTTTCCCGTTCAATAACGAGATGCGCTTTATGCC 766
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 602 TGTGAATCCCCCAGGTTCTCAGAGAGTTTTCCCGTTCAGTAACGAGATGCGCTTTATGCC 661
Query 767 TTCATTTGAAAACATTA-GAAGAGAGAGTTTGAAGCAAACGTATGGTGCTGATTTCACTG 825
||||||||| |||| || ||||||| |||||||||||||| ||| | | |||| ||||||
Sbjct 662 TTCATTTGAGAACA-TAGGAAGAGAAAGTTTGAAGCAAACATAT-G-G-TGATGTCACTG 717
Query 826 ACAACAGGTCTCTAGTTATTAATAAC-GCCAATTCCTTCGCATTGAGAAGCAGCTTTGTT 884
|||| ||||||||||||||||||||| | |||||||||| ||||||||||||||||||||
Sbjct 718 ACAATAGGTCTCTAGTTATTAATAACAG-CAATTCCTTCACATTGAGAAGCAGCTTTGTT 776
Query 885 CATGAGCATAGACCTTCTATCAGTTCCTATTTAAAAACAGACATGGGATCTGCTGGACCA 944
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 777 CATGAGCATAGACCTTCTATCAGTTCCTATCTAAAAACAGACATGGGATCTTCTGGACCA 836
Query 945 GCCTGGACAGGATCATTATCCAGTTCTGTTCCTATGAATGATCGTGCTTCTACGGTGGGG 1004
|||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||
Sbjct 837 GCCTGGACAGGATCATTATCCAGTTCTGTTCCTATGAAGGAGCGTGCTTCTACTGTGGGG 896
Query 1005 GATTTTGAAAATGGGAATAGTTTATCTGGATCCGGATCACTTCCAACGCTGCAAGGGGTA 1064
|||||||||||||||||| | |||||||||| |||||||||||||||||||||||| ||
Sbjct 897 CATTTTGAAAATGGGAATAATATATCTGGATCAGGATCACTTCCAACGCTGCAAGGGATA 956
Query 1065 GCTGTTTCTTCTGATAAAGGCGCAGAAGCCAACACTACTAGCACTAAAAAGAAAGTTTCT 1124
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 957 GCTGTTTCTTCTGATAAAGGCGCAGAAGGCAACACTACTAGCAATAAAAAGAAAGTTTCT 1016
Query 1125 TCAGATGACTGGGAACCTTCTGAACCTTTTAAAGCATCTTTTACAATTCCACCTTATATT 1184
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 TCAGATGACTGGGAACCTTCTGAACCTTTTAAAGCATCTTTTACAATTCCACCTTATATA 1076
Query 1185 CTTCCCTCGTCTGATGCCCTCTACGATCCTTTCACGGATATAGAGAATCTAGGAG-A--C 1241
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1077 CTTCCCTCGTCTGATGCCCTCTACGATCCTTTCACGGATATAGAGAATCTAGGAGGAGAC 1136
Query 1242 AGACCTCTTAATGATTCATTGTCAAGTAAAGGAGAACATGCACGGAAAAGTTCCTGCCAG 1301
||| ||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 1137 AGAGCTCTTAATGCTTCATTGTCAAGTAAAGGAGAACATGCACGGAAAAATTCCCGCCAG 1196
Query 1302 CAGAAAGATGGTGATTCTGCTAGTGGTCCCCAAGCACGGGA--TTGCAAGAATGATGATA 1359
|| ||||||||||||||||||||||||||| |||||||||| || |||||||||||||
Sbjct 1197 CAAAAAGATGGTGATTCTGCTAGTGGTCCCGAAGCACGGGAAATT--AAGAATGATGATA 1254
Query 1360 AAAGCAGTTCATGCAGTCAAAATCAACACCAAGAAACCGTGGCAAGGAGTTTGGAAGCAC 1419
|||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||
Sbjct 1255 AAAGCAGTTCATGCAGTCAAAACCAACACCAAGAAACTGTGACAAGGAGTTTGGAAGCAC 1314
Query 1420 ATGGAGTAGTGGAAGGGGTGGCTACGTCAGTGGTTGATCAAAATGATACAGCAACGCCTA 1479
||||||||||||||||||||||||| ||||||||||||||||||||| || |||| ||||
Sbjct 1315 ATGGAGTAGTGGAAGGGGTGGCTACTTCAGTGGTTGATCAAAATGATGCAACAACACCTA 1374
Query 1480 GCAAAGAGATTTCTTCGGCTACGGCTGCAGAGAATAGAGTTGTTTTGAAAAGAATCAAAC 1539
|||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||
Sbjct 1375 GCAAAGAGATTTCTTCGGCTGCGGCTGCAGAGAACAGAGTTGTTTTGAAAAGAAGCAAAC 1434
Query 1540 CTGCAGGGCATGATTCTTGGCATAGAAGTGATGGGTCTTCATATAAAAAGACAAAGAAAT 1599
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1435 CTGCAGGGCATGATTCTTGGCATAGAAGTGATGGGTCTTCATATAAAAAGACAATGAAAT 1494
Query 1600 CAGATGAGATAGATGGTGAAGTGAGGTCAGATGCAGGAATGAAAGTAATGAGACTATTCC 1659
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 1495 CAGATGAGATAGATGGTGAAGTGAGGTCAGATGCAGGGATGAAAGTAATGAGACAATTCC 1554
Query 1660 GGACTGCAGTTGTGGAAACCATTAAAGAAATGTTGAAACCGTTGTGGCGTGAGGGTCGTC 1719
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 1555 GGACTGCAGTTGTGGAAACCGTTAAAGAAATGTTGAAACCGTTGTGGCGTGAGGGCCGTC 1614
Query 1720 TAACTAAAGACGTGCATAACATGATAGTTAAAAAAGCTGCAGAAAAGGTAGTCGGCGCCG 1779
| || |||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 1615 TTACCAAAGACGTGCATAACATGATAGTTAAAAAAGCTGCAGAAAAGGTAGTCAGTGCCG 1674
Query 1780 CTGTCCAGTTTCATCAGGTGCCAACTGACACAGAATCAGTTGATCAATATCTTGGTTTGT 1839
|||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1675 CTGTCCAGTTCCATCAGGTACCAACTGACACCGAATCAGTTGATCAATATCTTGGTTTGT 1734
Query 1840 CTGGAACCAGAATTGTGAAACTTGTCGAGGGGTATGTCGAAAAGTATGGTAAACCCTGAG 1899
||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1735 CTGCAACCAGAATTGTGAAGCTTGTTGAGGGGTATGTCGAAAAGTATGGTAAACCCTGAG 1794
Query 1900 TTATCAAACCAAATGTCACTT 1920
|||||||||||||||||||||
Sbjct 1795 TTATCAAACCAAATGTCACTT 1815
Score = 62.1 bits (33), Expect = 2e-08
Identities = 35/36 (97%), Gaps = 0/36 (0%)
Strand=Plus/Plus
Query 702 TCTTTTGTGAATCCCCCAGGTTCTCAGAGAGTTTTC 737
||||| ||||||||||||||||||||||||||||||
Sbjct 552 TCTTTCGTGAATCCCCCAGGTTCTCAGAGAGTTTTC 587
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84941246350
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5