BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G33840.1
Length=1395
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482339 jgi|Araly1|482339|fgenesh2_kg.4__1399__AT2G33840.1 2060 0.0
Ahg921888 jgi|Araly1|921888|scaffold_103169.1 1003 0.0
> Ahg482339 jgi|Araly1|482339|fgenesh2_kg.4__1399__AT2G33840.1
Length=1331
Score = 2060 bits (1115), Expect = 0.0
Identities = 1263/1334 (95%), Gaps = 12/1334 (1%)
Strand=Plus/Plus
Query 2 CACTGGTAAACCCTAAGAATCCTCCGCAATTTCGCAATTTTGTGAAGGAGCCGCCGGCTA 61
||||| |||||||||||||||||| |||||||||||||| ||||||| ||||||||||||
Sbjct 1 CACTGCTAAACCCTAAGAATCCTCTGCAATTTCGCAATTCTGTGAAGAAGCCGCCGGCTA 60
Query 62 AATTTGATGGCAGACCAAAGTTCGGAGATCGTCAATGCTCTGTCGTCGGAGATGGAAGCT 121
| ||||||||| |||||| |||||| |||||||| ||||||||||||||||||| |||
Sbjct 61 ATTTTGATGGCGGACCAATCTTCGGATATCGTCAACACTCTGTCGTCGGAGATGGAGGCT 120
Query 122 GTTTCCGTTTCATCAACTCAGGCATCTTCTTCGTCCGATGGATTCCAGATGAGTGAAGAA 181
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 121 GTTTCCGTTTCATCAACTCAAGCATCTTCTTCGTCCGATGGATTACAGATGAGTGAAGAA 180
Query 182 GTTGAGAAGAGATACAAAATTGTTAGGAGTATCGGTGAGGAATGTATACAAGAGGAAGAG 241
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 181 GTAGAGAAGAGATACAAAATTGTTAGGAGCATCGGTGAGGAATGTATACAAGAGGAAGAG 240
Query 242 CTAAAGAATCTTCTTGCTAAGAAGGCTGCTCCGATTTGCTACGACGGCTTTGAACCATCA 301
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 241 CTAAAGAATCTTCTTGCTAAGAAGGCTACTCCGATTTGCTACGACGGCTTTGAACCATCA 300
Query 302 GGAAGAATGCACATTGCTCAGGGAGTGATGAAAGTCATCAATGTGAACAAAATGACTTCA 361
||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 301 GGAAGGATGCACATTGCTCAGGGAGTTATGAAGGTCATCAATGTGAACAAAATGACTTCA 360
Query 362 GCTGGTTGCAGAGTGAAGATTTGGATTGCTGATTGGTTTGCTCAGTTGAACAACAAAATG 421
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 361 GCTGGTTGCAGAGTGAAGATTTGGATTGCTGATTGGTTTGCTCAGTTGAACAATAAAATG 420
Query 422 GGTGGTGACTTGAAGAAAATCAGAGTGGTTGGAGAATACTTTCAAGAGATATGGAAGGCT 481
|| |||||||||||||| || ||||| |||||||||||||| ||||||||||||||||||
Sbjct 421 GGAGGTGACTTGAAGAAGATTAGAGTCGTTGGAGAATACTTCCAAGAGATATGGAAGGCT 480
Query 482 GCTGGGATGGATAATGACAAAGTAGAGTTTTTGTGGTCGTCCGAAGAAATTAATTCTAAG 541
||||||||||| ||||| |||||||||||||||||||| || |||||||| |||||||||
Sbjct 481 GCTGGGATGGACAATGATAAAGTAGAGTTTTTGTGGTCTTCTGAAGAAATCAATTCTAAG 540
Query 542 GCAGATAAGTATTGGCCTCTTGTGATGGACATTGCTCGCAAAAACAAGCTCCCTAGAATC 601
|| ||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||
Sbjct 541 GCGGATAAGTATTGGCCTCTTGTGATGGACATTGCTCGCAAAAACAAGTTGCCTAGGGTC 600
Query 602 TTAAGGTGTGTGCAGATTATGGGACGTAGTGAGACTGATGAACTGAGTGCTGCCCAGATC 661
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 601 TTAAGGTGTGTGCAGATTATGGGACGTAGTGAGACCGATGAACTGAGTGCTGCCCAGATC 660
Query 662 CTTTACCCATGCATGCAATGTGCAGATAtttttttCCTTGAGGCTGATATTTGCCAGCTT 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CTTTACCCATGCATGCAATGTGCAGATATTTTTTTCCTTGAGGCTGATATTTGCCAGCTT 720
Query 722 GGGATGGATCAAAGAAAAGTAAATGTGCTAGCGAGAGAATACTGTGATGACATAAAGAGG 781
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 721 GGGATGGATCAAAGAAAAGTAAACGTGCTAGCGAGAGAATACTGTGATGACATAAAGAGG 780
Query 782 AAAAACAAACCGATAATCTTGTCACACCATATGCTTCCTGGTCTCCAACAAGGACAAGAA 841
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 781 AAAAACAAACCGATAATCTTGTCACACCATATGCTTCCTGGTCTACAACAAGGACAAGAA 840
Query 842 AAGATGTCCAAAAGTGATCCATTATCTGCTATCTTTATGGAAGATGAAGAGGCTGAAGTT 901
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 841 AAGATGTCCAAAAGTGATCCATTATCTGCCATCTTTATGGAAGATGAGGAGGCTGAAGTT 900
Query 902 AATGTGAAGATCAAGAAAGCTTACTGCCCTCCAAAAGTCGTG-AAGGGCAATCCATGCCT 960
||||| |||||||||||||||||||| ||||||||| | ||| |||| ||||||||||||
Sbjct 901 AATGTAAAGATCAAGAAAGCTTACTGTCCTCCAAAAATTGTGCAAGG-CAATCCATGCCT 959
Query 961 CGAATACATCAAATACATCATTCTACCATGGTTTGATGAGTTCACAGTTGAGAGAAATGA 1020
|||||||| ||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 960 TGAATACATTAAATACATCATTCTACCGTGGTTTGATGAGTTCACAGTTGAGCGAAATGA 1019
Query 1021 AGAATATGGCGGTAACAAGACCTACAAAAGCTTTGAAGACATTGCTGCTGACTATGAGAG 1080
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1020 AGAATATGGCGGTAACAAGACCTACAAAAGCTTTGAAGAGATTGCTGCTGAATATGAGAG 1079
Query 1081 CGGCGAGTTGCACCCTGGCGATCTAAAGAAAGGCCTGATGAACGCGTTGAATAAGATTTT 1140
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1080 CGGAGAGTTGCACCCTGGGGATCTAAAGAAAGGCCTGATGAACGCGTTGAATAAGATCTT 1139
Query 1141 GCAACCTGTTCGTGATCATTTCAAAACAGACGCACGCGCGAAGAATCTACTCAAACAGAT 1200
|||||||||||||||||| ||||||||||||||||| || |||||||| |||||||||||
Sbjct 1140 GCAACCTGTTCGTGATCACTTCAAAACAGACGCACGGGCCAAGAATCTGCTCAAACAGAT 1199
Query 1201 CAAGGCTTACAGAGTCACCAGATAAAATTAGAGAGCCAGAATGTGTCATTG-----A-AA 1254
|||||||||||||||||||||||||||||| |||||||||||||||||||| | ||
Sbjct 1200 CAAGGCTTACAGAGTCACCAGATAAAATTACAGAGCCAGAATGTGTCATTGTTTCGACAA 1259
Query 1255 -GCTTTCTCTCACTTTATGAAA-CTTATTATTACCAAAAACACACTGTAAAACTCCTGGA 1312
||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||
Sbjct 1260 AGCTTTCTCTCACTTTATGAAAGCT-ATTATTACCAAAA-CACACTGTAAAACTCCTGGA 1317
Query 1313 TTTTGTTTATTTGG 1326
||||||||||||||
Sbjct 1318 TTTTGTTTATTTGG 1331
> Ahg921888 jgi|Araly1|921888|scaffold_103169.1
Length=2384
Score = 1003 bits (543), Expect = 0.0
Identities = 917/1093 (84%), Gaps = 43/1093 (4%)
Strand=Plus/Plus
Query 132 CATCAA-CTCAGGCATCTTCTTC-G-T-CCGATGGATTCCAGATGAGTGAAGAAGTTGAG 187
|||||| | || ||||||||||| | | || ||||| ||| |||| || || | |||
Sbjct 1229 CATCAAGCGCA-GCATCTTCTTCGGATACC---GGATTACAGGTGAGCGAGGAGGCCGAG 1284
Query 188 AAGAGATACAAAATTGTTAGGAGTATCGGTGAGGAATGTATACAAGAGGAAGAGCTAAAG 247
| || |||||| | ||| |||||||| ||||||||||| ||||||||||| ||||| |||
Sbjct 1285 ATGAAATACAAGACTGTGAGGAGTATTGGTGAGGAATGCATACAAGAGGATGAGCTGAAG 1344
Query 248 AATCTTCTTGCTAAGAAGGCTGCTCCGATTTGCTACGACGGCTTTGAACCATCAGGAAGA 307
|||||||| || |||||| |||||||||| ||||| || || |||||||||||||||||
Sbjct 1345 AATCTTCTAGCCAAGAAGCCTGCTCCGATCTGCTATGATGGTTTTGAACCATCAGGAAGG 1404
Query 308 ATGCACATTGCTCAGGGAGTGATGAAAGTCATCAATGTGAACAAAATGACTTCAGCTGGT 367
|||||||| || |||||||||||||| |||| ||||||||||||| ||||||||||||||
Sbjct 1405 ATGCACATCGCCCAGGGAGTGATGAAGGTCACCAATGTGAACAAATTGACTTCAGCTGGT 1464
Query 368 TG-CAGAGTGAAGATTTGGATTGCTGATTGGTTTGCTCAGTTGAACAACAAAATGGGTGG 426
|| || |||||| ||||||||||| |||||||||||||| ||||||||||| |||| ||
Sbjct 1465 TGCCA-AGTGAAAATTTGGATTGCAGATTGGTTTGCTCAATTGAACAACAAGTTGGGAGG 1523
Query 427 TGACTTGAAGAAAATCAGAGTGGTTGGAGAATACTTTCAA-GAGATATGG-AAGGCTGCT 484
||||||| ||| ||| |||||||||||||||||| ||||| || || ||| || || | |
Sbjct 1524 TGACTTGGAGAGAATTAGAGTGGTTGGAGAATAC-TTCAAGGAAATTTGGCAA-GCAGGT 1581
Query 485 GGGATGGATAATGACAAAGTAGAGTTT-TTGTGGTCGTCCGAAGAAATTAAT-TCTAA-G 541
|||||| | ||||||||||||| |||| || ||| | || || ||||| ||| | || |
Sbjct 1582 GGGATGAACAATGACAAAGTAGCGTTTCTT-TGGGCATCAGACGAAATAAATGGC-AAGG 1639
Query 542 GCAGATAAGTATTGGCCTCTTGTGATGGACATTGCTCGCAAAAACAAGCTCCCTAGAATC 601
| | |||||||||||||||||||||||||||||||||| | |||||| |||| | |||||
Sbjct 1640 GGA-ATAAGTATTGGCCTCTTGTGATGGACATTGCTCGTAGAAACAACCTCCGTCGAATC 1698
Query 602 TTAAGGTGTGTGCAGATTATGGGACGTAGTGAGACTGATGAACTGAGTGCTGCCCAGATC 661
|| ||||||| |||||||||||||||||||||||| || | |||||||| || || ||
Sbjct 1699 TTGAGGTGTGGGCAGATTATGGGACGTAGTGAGACCGAGGTGCTGAGTGCAGCTCAAATT 1758
Query 662 CTTTACCCATGCATGCAATGTGCAGATAtttttttCCTTGAGGCTGATATTTGCCAGCTT 721
|||||||| || ||||| ||||| |||||||| || || ||||||||||||||||||| |
Sbjct 1759 CTTTACCCGTGTATGCAGTGTGCGGATATTTTCTTACTCGAGGCTGATATTTGCCAGC-T 1817
Query 722 GGG-ATGGATCAAAGAAAAGTAAATGTGCTAGCGAGAGAATACTGTGATGACATAAAGAG 780
||| |||||||| | |||||||| ||||||| ||||||||||||| |||||| ||||
Sbjct 1818 GGGTATGGATCAGCGGAAAGTAAACATGCTAGCAAGAGAATACTGTGCTGACATTAAGA- 1876
Query 781 GAAA-AACAAACCGATAATCTTGTCACACCATATGCTTCCTGGTCTCCAACAAGGACAAG 839
|||| || ||||| || |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1877 GAAAGAATAAACCCATCATCTTGTCCCACCATATGCTTCCTGGTCTCCAACAAGGACAAG 1936
Query 840 AAAAGATGTCCAAAAGTGATCCATTATCTGCTATCTTTATGGAAGATGAAGAGGCTGAAG 899
|||||||||| ||||| ||||||| |||||| || |||||||||||||| |||||||| |
Sbjct 1937 AAAAGATGTCTAAAAGCGATCCATCATCTGCAATATTTATGGAAGATGAGGAGGCTGATG 1996
Query 900 TTAATGTGAAGATCAAGAAAGCTTACTGCCCTCC-AAAAGTCGTG-AAGGGCAATCCATG 957
|||||| ||| ||||| |||||||| |||||||| |||| | ||| |||| |||||||||
Sbjct 1997 TTAATGAGAAAATCAACAAAGCTTATTGCCCTCCGAAAACT-GTGGAAGG-CAATCCATG 2054
Query 958 CCTCGAATACATCAAATACATCATTCTACCATGGTTTGATGAGTTCACAG-TTGAGAGA- 1015
||||||||| |||||||||| |||||||| | || ||||||||| || |||| ||
Sbjct 2055 TCTCGAATACGTCAAATACATTGTTCTACCACGATTCAATGAGTTCA-AGGTTGAAAGTG 2113
Query 1016 AATGAAGAATATGGCGGTAACAAGACCTACAAAAGCTTTGAAGACATTGCTGCTGACTAT 1075
|| |||||| || || |||||||||| |||||||||||| || |||| ||| |||||
Sbjct 2114 AA--AAGAATG-GG-GGCAACAAGACCTTCAAAAGCTTTGAGGATATTGTTGCCGACTAC 2169
Query 1076 GAGAGCGGCGAGTTGCACCCTG-GCGATCTAAAGAAAGGCCTGATGAACGCGTTGAATA- 1133
|||||||||||| |||| |||| | ||||| ||||||| ||||||||| || |||||||
Sbjct 2170 GAGAGCGGCGAGCTGCATCCTGAG-GATCTGAAGAAAGCCCTGATGAAAGCATTGAATAT 2228
Query 1134 AGATTTTGCAACCTGTTCGTGATCATTTCAAAAC-AGACGCA-CGCGCGAAGAATCTACT 1191
| | | ||||||||||||| |||||||| ||||| | ||| | || || || ||||||||
Sbjct 2229 A-ACTCTGCAACCTGTTCGCGATCATTTTAAAACCA-ACG-AGCGTGCCAAAAATCTACT 2285
Query 1192 CAAACAGATCAAG 1204
||||| |||||
Sbjct 2286 GGAACAGGTCAAG 2298
Score = 754 bits (408), Expect = 0.0
Identities = 761/926 (82%), Gaps = 46/926 (5%)
Strand=Plus/Plus
Query 320 CAGGGAGTGATGAAAG-TCATCAATGTGAACAAAATGACTTCAGCTGGTTGCAGAGTGAA 378
|||||| ||||| ||| || | |||||||||||| ||||||| ||||||||| |||| ||
Sbjct 277 CAGGGACTGATG-AAGATCTTGAATGTGAACAAATTGACTTCTGCTGGTTGCCGAGTCAA 335
Query 379 GATTTGGATTGCTGATTGGTTTGC-TCAGT-TGAACAACAAAATGGGTGGTGACTTGAAG 436
||||||||||| ||||||||||| | | | |||||||||| | || ||||| ||||||
Sbjct 336 AATTTGGATTGCAGATTGGTTTGCAT-A-TATGAACAACAAGTTAGGAGGTGATTTGAAG 393
Query 437 AAAATCAGAGTGGTTGGAGAATACTT-TCAA-GAGATATGGAAGGCTGCTGGGATGGATA 494
|||||||| |||||||||||||| || | || ||||||| |||| ||||||||| | |
Sbjct 394 AAAATCAGGGTGGTTGGAGAATA-TTAT-AAGGAGATATTTCAGGCAGCTGGGATGAACA 451
Query 495 ATGACAAAGTAGAGTTTTTGTGGTCGTCCGAAGAAATTAATTCTAAGGCAGATAAGTATT 554
||| || ||||||||| | ||||| ||||| ||||| ||| ||| || |||| |||| |
Sbjct 452 GTGAGAATGTAGAGTTTCTATGGTCATCCGATGAAATAAATGCTAGGGGAGATGAGTACT 511
Query 555 GGCCTCTTGTGATGGACATTGC-TCGCAAAAACAAG-CTC-CCTAGAATCTTAA-GGTGT 610
|||||||||||||||||||||| | ||| ||| || ||| || | ||| || |||||
Sbjct 512 GGCCTCTTGTGATGGACATTGCGT-GCAGAAA-TAGTCTCGCCCA-AAT-AAAACGGTGT 567
Query 611 GTGCAGATTATGGGACGT-AGTGAGACTGATGAACTGAGTGCTGCCCAGATCCTTTACCC 669
||| |||||||| | ||||| ||||| || |||||||| || || || || ||
Sbjct 568 ATGCCTATTATGGG-TTTGAGTGAAACTGAGGAGCTGAGTGCAGCTCACATTCTCTATGT 626
Query 670 ATGCATGCAATGTGCAGATAtttttttCCTTGAGGCTGATATTTGCCAGCTTGGGATGGA 729
||| ||||||||||| |||| ||| ||||| |||||||||||||||||||||||||||||
Sbjct 627 ATGTATGCAATGTGCCGATACTTTCTTCCTCGAGGCTGATATTTGCCAGCTTGGGATGGA 686
Query 730 TCAAAGAAA-AGTAAATGTGCTAGCGAGAGAATACTGTGATGACATAAAGAGGAAAAACA 788
||| ||| ||||||| ||||||| ||||| || ||||||| | | |||||| |||||
Sbjct 687 TCAGC-AAACAGTAAATCTGCTAGCAAGAGATTATTGTGATGCCGTTAAGAGGGGAAACA 745
Query 789 AACC-GATAATCTTGTCACACCATATGCTTCCTGGTCTCCAACAAGGACAAGAAAA-GAT 846
|||| | | |||||||| |||||||||||||||||||| ||||||||||| ||||| |||
Sbjct 746 AACCTG-TCATCTTGTCCCACCATATGCTTCCTGGTCTTCAACAAGGACA-GAAAAAGAT 803
Query 847 GTCCAAAAGTGATCCATTA-TCTGCTATCTTTATGGAAGATGAAGAGGCTGAAGTTAATG 905
||| || |||||||| || ||||||||||| ||||||||||||||||||||||||||||
Sbjct 804 GTCTAAGAGTGATCC-TTCCTCTGCTATCTTCATGGAAGATGAAGAGGCTGAAGTTAATG 862
Query 906 TGAAGATCAAGAAAGCTTACTGCCCTCCAAA-AGTCGTG-AAGGGCAATCCATGCCTCGA 963
| ||||| ||||||||||| ||||| || | | | ||| |||| || |||||||| ||
Sbjct 863 TTAAGATTAAGAAAGCTTATTGCCCCCCGGATATT-GTGGAAGGT-AACCCATGCCTTGA 920
Query 964 ATACATCAAATACATCATTCTACCATGGTTT-GATGAGTTCACAGTTGAGAGAAATGAAG 1022
|||| | |||||||||||| |||| ||||| | ||||||||||||||||||| ||||
Sbjct 921 ATACGTGAAATACATCATTTTACCCTGGTTCAG-TGAGTTCACAGTTGAGAGAGATGAC- 978
Query 1023 AA-TATGGCGGTAACAAGACCTACAAAAGCTTTGAAGACATTGCTGCTGACTATGAGAGC 1081
|| ||||||||||||| ||||| ||||||||||||||||||||| | ||||||||| |||
Sbjct 979 AAGTATGGCGGTAACAGGACCTTCAAAAGCTTTGAAGACATTGCCGTTGACTATGAAAGC 1038
Query 1082 GGCGAGTTGCACCCTG-GCGATCTAAAGAAAGGC-CTGAT-GAACGCGTTGAATAAGATT 1138
||||||||||||||| | ||| | ||| | | | ||| | ||| || |||||||||||
Sbjct 1039 GGCGAGTTGCACCCTAAG-GATTTGAAGGACG-CTCTG-TCGAAAGCATTGAATAAGATA 1095
Query 1139 TTGCAACCTGTTCGTGATCATTTCAAAAC-AGAC-GCACGCGCGAAGAATCTACTCAAAC 1196
| |||||||||||||||||||||||||| | || || ||| | || ||||| |||||||
Sbjct 1096 CTACAACCTGTTCGTGATCATTTCAAAACCA-ACAGC-CGCACCAAAAATCTGCTCAAAC 1153
Query 1197 AGATCAAGGCTTACAGAGTCACCAGA 1222
|| | |||| ||||| | ||||||||
Sbjct 1154 AGGTTAAGGGTTACAAAATCACCAGA 1179
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52145545405
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5