BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G33845.1
Length=1331
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482340 jgi|Araly1|482340|fgenesh2_kg.4__1400__AT2G33845.1 1206 0.0
> Ahg482340 jgi|Araly1|482340|fgenesh2_kg.4__1400__AT2G33845.1
Length=1183
Score = 1206 bits (653), Expect = 0.0
Identities = 879/980 (90%), Gaps = 47/980 (5%)
Strand=Plus/Plus
Query 85 TCGAGATTTTCTTCAGTCCCAATGGCGTCAAACACCAGCAACGACAATTTCCAGCATAGA 144
|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 43 TCGAGATTTTCTCCAGTCCCAATGGCGTCAAACACCAGCAACGACAATTTCCAACATAGA 102
Query 145 CCACGGCAAAGAAACGGACCACCTCCTCCGCGGCGACAGGGAAGAAATCCGCCGCCTCCG 204
|||||||||||||||||||||||||| ||||| ||||| ||||||||||| |||||||||
Sbjct 103 CCACGGCAAAGAAACGGACCACCTCCACCGCGTCGACAAGGAAGAAATCCACCGCCTCCG 162
Query 205 TCTTCGTCAACGCGAACTTCTCAGAATCAGCCACCACAGCATACGCCGCAGGAGAAGAAG 264
|| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 163 TCGTCGTCAACGCGAACTTCTCAGAATCAGCCACAACAGCATACGCCGCAGGAGAAGAAG 222
Query 265 AAACCGGTGTTTGTCAAAGTGGATCAGCTTAAACCTGGAACGAGCGGCCACACTTTGACT 324
||||| ||||| || || || |||||||||||||| ||||| |||||||||||||||||
Sbjct 223 AAACCAGTGTTCGTGAAGGTAGATCAGCTTAAACCAGGAACAAGCGGCCACACTTTGACC 282
Query 325 GTTAAAGTCGTCGATCAGAATTCCGTACCTCAGAAACCGGGAGCTGCTTCTTCTTCTCAT 384
||||||||||||||||||||||||||||||||||| || |||||||||||||| || ||
Sbjct 283 GTTAAAGTCGTCGATCAGAATTCCGTACCTCAGAAGCCTGGAGCTGCTTCTTC-TCACA- 340
Query 385 CTCCGACCTGCTAGGATCTCTGAGTGTCTTGTTGGAGATGAGACTGCTTGCATCCTCTTC 444
||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 341 -TCCGACCTGCTCGGATCTCTGAGTGTCTCGTTGGAGACGAGACTGCTTGCATCCTCTTC 399
Query 445 ACTGCTCGCAACGATCAAGTGGAATTGATGAAACCAGGAGCTACTGTGAATCTTCGGAAT 504
||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||
Sbjct 400 ACTGCTCGCAACGATCAAGTGGACTTGATGAGACCAGGAGCTACTGTGAATCTCCGGAAT 459
Query 505 GCAAAGATAGATATGTTCAAGGGATCAATGAGGCTTGCTGTTGATAAATGGGGTCGCATC 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 460 GCAAAGATAGATATGTTCAAGGGATCAATGAGGCTTGCTGTTGATAAATGGGGTCGCATC 519
Query 565 GAGGCCACTGAACCAGCTGACATTACTGTTAAAGAAGACAACAATCTGTCCCTTGTGGAG 624
|||| ||||||||| | |||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 520 GAGGTCACTGAACCGGTTGACATTACTGTTAAAGAAGACAACAATTTGTCCCTAGTGGAG 579
Query 625 TACGAGCTCGTCAATGTCGTTGAGGAATGATGTCTGACACCCCATGTCTCTAATAGGTGA 684
||||||||||||||||||||||||||||||| |||| | ||| |||||||||||||||||
Sbjct 580 TACGAGCTCGTCAATGTCGTTGAGGAATGATCTCTGGC-CCC-ATGTCTCTAATAGGTGA 637
Query 685 TATATCAAGTGCCACAATGAATTTTGTTTTGCGGTGAACACCGTTGCGGGTAAAATATAT 744
||||||||| ||||||||||||||||||||| |||||||||||| |||||| ||||||||
Sbjct 638 TATATCAAGCGCCACAATGAATTTTGTTTTGGGGTGAACACCGT-GCGGGTTAAATATAT 696
Query 745 TTATCTTATGATGTTGCAAGTTTGCTATATTTATCTACCAGTTGATTTGTGTTGATCTCG 804
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 697 TTATCTTATGATGTTGCAAGTTTGCTATATTTATCTACCGGTTGATTTGTGTTGATCTCG 756
Query 805 GGTTTGGTAT--TCGGTATGTACTCTTTCAGCTGTGGATGCTTCTGTAACCTCTCTACTT 862
|||||||||| ||||||||||| ||||||||||||||||||| | |
Sbjct 757 GGTTTGGTATGATCGGTATGTACGCTTTCAGCTGTGGATGCTT-T-T------------- 801
Query 863 TTGTATGGTCTTTAAAGAGAAGGTTAATGAAAAAATTGGTGAA---TTT-GTGTCCAAAA 918
|||||||| || ||| ||||||||||||||||||||||||| ||| ||||||||||
Sbjct 802 --GTATGGTCCTTGAAGGGAAGGTTAATGAAAAAATTGGTGAAAAGTTTTGTGTCCAAAA 859
Query 919 T--GTCTTTGCAAATTA---GTCAAATCC-GATACACAGTTTTGATTGTGAAACACCCTC 972
| ||||| |||| ||| || || | | || | | ||||||||||| ||||||| |
Sbjct 860 TATGTCTT-GCAATTTATAAGTTAAGTTCTGA-A-A---TTTTGATTGTGCAACACCCAC 913
Query 973 AAAAATAAA-GAAGCTAGACTTGGG-T--A-GTAGTCAGAATTTGCTAATAAATAATAAC 1027
|||| ||| |||| | || ||||| | | || |||||| |||| |||||| |||||||
Sbjct 914 CAAAA-AAACGAAGATCGAGTTGGGGTTTAAGTTGTCAGATTTTGTTAATAAGTAATAAC 972
Query 1028 TGTTACTGAACCGGTTGGTC 1047
||||||||||||||||||||
Sbjct 973 TGTTACTGAACCGGTTGGTC 992
Score = 270 bits (146), Expect = 2e-71
Identities = 180/195 (92%), Gaps = 7/195 (4%)
Strand=Plus/Plus
Query 1129 ATCTTATGACCCAAGACGAAACATGACACAG-CTACTGTCACTTCATCACCTTGCTGCGA 1187
||||||||||| ||||||||||||||||| | |||| ||||||||||||||||||| |||
Sbjct 993 ATCTTATGACCTAAGACGAAACATGACAC-GACTACCGTCACTTCATCACCTTGCTTCGA 1051
Query 1188 ACTGCATCCATTCTTGC-C-CTTCATTTGAGATTCTTCATGCATCATCGATGCAATCTGA 1245
||||||||||||||||| | ||||||||||||||| |||||||||||| ||||| |||||
Sbjct 1052 ACTGCATCCATTCTTGCACTCTTCATTTGAGATTCATCATGCATCATCAATGCAGTCTGA 1111
Query 1246 GCAAATAGAACATCATCATATCAGTATCGAGAAAACATAACCTCATGTGTTGCAGGATTC 1305
|||||||| | | ||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1112 GCAAATAG-A-A-CATCATATCAGTATCCAGAAAACATAAGCTCATGTGTTGCAGGATTC 1168
Query 1306 ATGAAAGTTTCTATT 1320
|||||||||||||||
Sbjct 1169 ATGAAAGTTTCTATT 1183
Score = 63.9 bits (34), Expect = 3e-09
Identities = 42/45 (93%), Gaps = 3/45 (7%)
Strand=Plus/Plus
Query 23 AATCTAGGGCTTTCTTCTAGAGATCGAAGAAGAAGAGTTCACATA 67
|||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1 AATCTAGGGCTTTCTTCTAGAGATCGAAGAAGAA---TTCACATA 42
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49788529602
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5