BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G33847.1
Length=667
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933986 jgi|Araly1|933986|scaffold_401974.1 427 4e-119
> Ahg933986 jgi|Araly1|933986|scaffold_401974.1
Length=340
Score = 427 bits (231), Expect = 4e-119
Identities = 266/283 (94%), Gaps = 2/283 (1%)
Strand=Plus/Plus
Query 50 ACGAGAATCGGGAACTTTCAATGTCCGCCGCCAGATCCGTCTTCCGTTCCGGTGTTGGCC 109
||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||| |||
Sbjct 1 ACGAGAATCGGAAACTTTCGATGTCCGCCGCCAGATCCGTCCTCCGTTCCGGTGTTAGCC 60
Query 110 GAGCCGCCGTTGCCGCGTTAAGGTCGAC-AAAGCCTATGCCGTCTTCTGCGCGGTCTTCG 168
|||||| ||||||||| || |||||||| ||| ||| ||||||||| |||||||||||||
Sbjct 61 GAGCCGTCGTTGCCGCATTGAGGTCGACGAAA-CCTGTGCCGTCTTTTGCGCGGTCTTCG 119
Query 169 TTTAAGTTGCCTAAACAGAGTCCTCTCTCTCACCGCATTTTCAGATCTCCGGTGGAATTG 228
|||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||
Sbjct 120 TTTAAGTTGCCTAAACAGAGCCCACTCTCTCACCGCATTTTCAGGTCTCCGGTGGAATTG 179
Query 229 AGCTGCTGCGTCGAGACGATGCTACCGTACCACACGGCCACTGCTTCTGCTTTGCTCAAT 288
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 180 AGCTGCTGCGTCGAGACGATGCTTCCGTACCACACGGCCACTGCTTCTGCTTTGCTCAAT 239
Query 289 TCGATGCTTTCAGTTTCAGGGCGCTCCATTTGGACTTTCCAAG 331
|||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 240 TCGATGCTCTCAGTTTCAGGGCGCTCCATTTGGACTCTCCAAG 282
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24474912714
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5