BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G33850.1
Length=988
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482341 jgi|Araly1|482341|fgenesh2_kg.4__1401__AT2G33850.1 1304 0.0
> Ahg482341 jgi|Araly1|482341|fgenesh2_kg.4__1401__AT2G33850.1
Length=921
Score = 1304 bits (706), Expect = 0.0
Identities = 854/921 (93%), Gaps = 28/921 (3%)
Strand=Plus/Plus
Query 32 TTTTCCACTAGCTCATGTCTCTTCTTCTTCCTCTTAACACTTGTTCTTTTCTCAACCCAA 91
||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||
Sbjct 7 TTTTCCACTAGCTCATGTCTCTTCTTC-T--TCTTAACACTTGTTCTTTTCTCCACCCAA 63
Query 92 ATCAG-TGCAAGAAACAGCTACTCCTTTGGCAAGTTCCAAAGAGAGGACCCCAAAGAGCA 150
||| | ||||||| |||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 64 ATC-GATGCAAGAGACAGCTACTCATTTGGCAAGTTCCAAAGAGAAGACCCCAAAGAGCA 122
Query 151 AAACCCTAACAATCTTGTCCCTATCGAAACCAACGAGAAGAAAGAGCCAGATGACCAGAA 210
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 123 AAACCCTAACAATCTTGTCCCTATCCAAACCAACGAGAAGAAAGAGCCAGATGACCAGAA 182
Query 211 CCCTGCCTTTATCCCCCAGTCCGAAAACGGGTACGGCTTGTATGGTCACGAGACAACCGA 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 CCCTGCCTTTATCCCCCAGTCCGAAAACGGGTACGGCTTGTATGGTCACGAGACAACCGA 242
Query 271 CAACAACAATGAAGAGTTGAACAATAACAAGTACGAGGACAACGTTAACTACGACGACTC 330
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 243 CAACAACAATGAAGAGTTGAACAATAACAAGTACGAGGATAACGTTAACTACGACGACTC 302
Query 331 TTTCTCCACCCCCAGCCTAAGCGAAACGGCTCAAACCCAAGAATCTTACAAGAACTACAA 390
|||||||||||| |||||||||||| |||| ||||| |||||||||||||| |||||||
Sbjct 303 TTTCTCCACCCCAAGCCTAAGCGAAGCGGCCCAAACGCAAGAATCTTACAAAAACTACAG 362
Query 391 AGAGAGCTATCCTAAGACTACCGAGATTTACGACAACAACAAGGACACGAGCTACTACGA 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 AGAGAGCTATCCTAAGACTACCGAGATTTACGACAACAACAAGGACACGAGCTACTACGA 422
Query 451 AAACTCGAATGCTTACGGGACAGATAAGAGAGATAATGATATTAATGATCCGTACAAGGG 510
|||||| |||||||||||||| ||||||||||| | | | | |||||||||
Sbjct 423 AAACTCAAATGCTTACGGGACGGATAAGAGAGAGGA-G--------G--C-GTACAAGGG 470
Query 511 T--T-ATAGCAACAAGGACACGAGCTACTACGAAAACCCCAATACTTACGGGACGGAGAA 567
| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 TCGTTATAACAACAAGGACACGAGCTACTACGAAAACCCCAATACTTACGGGACGGAGAA 530
Query 568 GAGAGAGAAGGAGCCGGCGTACAGGGGTTATAACAACAACGTAGAGAGACAAGGGATGAG 627
||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 531 GAGAGAGAAGGAG--G-CGTACAAGGGTTATAACAACAACGTAGAGAGACAAGGGATGAG 587
Query 628 CGATACGAGGTATATGGCGAATGGTAAGTACTATTACGACCTTGACGATGACAGAAACCA 687
|||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||
Sbjct 588 CGATACGAGGTATATGGCAAATGGTAAGTACTACTACGACCTTGACGACGACAGAAACCA 647
Query 688 CGGCCGTTTCTACCAGAATCATTACTACAACTACAAGCCCACCGGTTACAATGAGAAGAA 747
||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||
Sbjct 648 CGGCCGTTTCTACCAGAATCATTACTATAACTACAATCCCACCAGTTACAATGAGAAGAA 707
Query 748 GTCCAACTTCAAGAATCCATACGATTCCAACCAACAGTCCGAGATGTTGGGGGAAGAGCA 807
||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||
Sbjct 708 ATCCAACTTCAAGAATCCATACGATTCCAACCAACAATACGAGATGTACGGGGAAGAGCA 767
Query 808 AGGAGATCAGATCACTCCATGAGCAT-CACCGCATGAAACAATAATAAGTATCTGCTTTT 866
|||||||||| ||||||||||||||| | || |||||||||| ||||||||| |||||||
Sbjct 768 AGGAGATCAGTTCACTCCATGAGCATGC-CCACATGAAACAAAAATAAGTATTTGCTTTT 826
Query 867 GTATTCTCGATTTTTGTTTCAAGTGGTTTAATCATCAGTCAAAAGTATAATTTTAATTTG 926
| || |||||||||||||||| ||||||||| ||||||||||||||||||| | || |
Sbjct 827 ATGTTTTCGATTTTTGTTTCAAATGGTTTAATTATCAGTCAAAAGTATAATTGT--TT-G 883
Query 927 CATATAAAATTTGGaaaaaaa 947
|||||||||||||||||||||
Sbjct 884 CATATAAAATTTGGAAAAAAA 904
Score = 91.6 bits (49), Expect = 1e-17
Identities = 80/93 (86%), Gaps = 9/93 (10%)
Strand=Plus/Plus
Query 517 CAACAAGGACACGAGCTACTACGAAAACCCCAATACTTACGGGACGGAGAAGAGAGAGAA 576
|||||||||||||||||||||||||||| | ||| ||||||||||||| |||||||||
Sbjct 399 CAACAAGGACACGAGCTACTACGAAAACTCAAATGCTTACGGGACGGATAAGAGAGAG-- 456
Query 577 GGAGCCGGCGTACA-GGG--GTTATAACAACAA 606
| || | |||||| ||| |||||||||||||
Sbjct 457 G-AG--G-CGTACAAGGGTCGTTATAACAACAA 485
Score = 82.4 bits (44), Expect = 6e-15
Identities = 54/59 (92%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 425 AACAACAAGGACACGAGCTACTACGAAAACTCGAATGCTTACGGGACAGATAAGAGAGA 483
|||||||||||||||||||||||||||||| | ||| |||||||||| || ||||||||
Sbjct 478 AACAACAAGGACACGAGCTACTACGAAAACCCCAATACTTACGGGACGGAGAAGAGAGA 536
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36712369071
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5