BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G33855.1

Length=884
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg933988 jgi|Araly1|933988|scaffold_401976.1                        680    0.0  


> Ahg933988 jgi|Araly1|933988|scaffold_401976.1
Length=481

 Score =  680 bits (368),  Expect = 0.0
 Identities = 427/456 (94%), Gaps = 2/456 (0%)
 Strand=Plus/Plus

Query  22   AGAAAACGTAATCCAAGCCAATGGAGGAGACGACATGGGGACAGAGAATACAAGCGGTGA  81
            ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct  1    AGAAAACGTAATCCAAGCCAATGGAGGAGACGACATGGGAACAGAGATTACAAGCGGTGA  60

Query  82   CACATATCCTCACAAACCCAACAACGAAACCATCACTTTACTCTCAATTCTTCATCGGAG  141
            |||| || |||||||||||||||||||||||||||||| |||||||||||||||||||| 
Sbjct  61   CACACATACTCACAAACCCAACAACGAAACCATCACTTCACTCTCAATTCTTCATCGGAA  120

Query  142  CCATAATTCCAAACTACGTATCGTGGGATTACCCTCCGGTCTATTCGCCGACGCATCTCC  201
            || |||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||
Sbjct  121  CCCTAATTCCAAACTACATATCGTGGGATTACCCTCCGATCTATTCGCCGTCGCATCTCC  180

Query  202  GTCAATGGTGGGTTTCTCAGTTCTTCAAAAGGGTATCGAGATTTGGGCTGCCTGATACAT  261
            ||||||||||||||||||| |||||||||||||| |||||||| || || |||||||| |
Sbjct  181  GTCAATGGTGGGTTTCTCAATTCTTCAAAAGGGTGTCGAGATTCGGACTTCCTGATACTT  240

Query  262  CGTGGAGGTCGAATAGCCCGTATTATCAGCCACCGGCGGCGGTTATGGCTGTCggagttg  321
            | |||||||||||| | |||||||||||||| ||||||||||||||||| ||||||||||
Sbjct  241  CTTGGAGGTCGAATTGTCCGTATTATCAGCCGCCGGCGGCGGTTATGGCCGTCGGAGTTG  300

Query  322  aggaagggaaatgggggaa-agaggagaggagagagtatgcgaggaagaggctgaggagg  380
            |||||||||||| |||||| ||| ||||||||||||||||||||||||||| ||||||||
Sbjct  301  AGGAAGGGAAAT-GGGGAAGAGAAGAGAGGAGAGAGTATGCGAGGAAGAGGTTGAGGAGG  359

Query  381  aagagaTTGGTGAATGAAGTGAATCCATATATTCCTCTTTTAGTTCCGAATTTGCTTTTG  440
            |||| | |||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct  360  AAGAAACTGGTGAATGAAGTGAATCCATACATTCCTCTCTTAGTTCCGAATTTGCTTTTG  419

Query  441  TTTACTCTCTTGTTATGGGATCCTCTTCCTGAGTAA  476
            ||||||||||||||||||||||||||||||||||||
Sbjct  420  TTTACTCTCTTGTTATGGGATCCTCTTCCTGAGTAA  455



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32747585703


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5