BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G33860.1
Length=2367
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933989 jgi|Araly1|933989|scaffold_401977.1 1469 0.0
> Ahg933989 jgi|Araly1|933989|scaffold_401977.1
Length=1807
Score = 1469 bits (795), Expect = 0.0
Identities = 935/1001 (93%), Gaps = 15/1001 (1%)
Strand=Plus/Plus
Query 1222 CTCATGCCATATCGACCCATAGCGTTTTCAGCATTTCCTACAAC----CCCAA---GGCA 1274
||||||||||||| || ||||||||||||||||||| ||||||| | || ||||
Sbjct 813 CTCATGCCATATCAACTCATAGCGTTTTCAGCATTTACTACAACAAATCATAATTGGGCA 872
Query 1275 AGCTGGTCAAACTTCATAATCCCTGCACCAAAGTTCTTGAAGGTTGTTGACTATCCCTTT 1334
||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 873 AGCTGGTCAAATTTCATAATCCCTGCACCAAAGTTCTTGAAGATTGTTGACTATCCATTT 932
Query 1335 TGCATTGGGATGAGATTTAAAGCGAGGGTTGAATCTGAAGATGCATCTGAGAGAAGATCC 1394
|||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 933 TGCATTGGTATGAGATTTAAAGCGAGGGTTGAGTCTGAAGATGCCTCTGAGAGAAGATCC 992
Query 1395 CCTGGGATTATAAGTGGTATCAGCGACTTGGATCCAATCAGGTGGCCTGGTTCAAAATGG 1454
||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 993 CCTGGGATTATAACTGGTATCAGCGACTTGGATCCTATCAGGTGGCCTGGTTCAAAATGG 1052
Query 1455 AGATGCCTTTTGGTAAGGTGGGACGACATTG-TGGCAAATGGGCATCAACAGCGTGTCTC 1513
||||||||| ||||||||||||| ||||||| | || ||||| ||||||||||| |||||
Sbjct 1053 AGATGCCTTCTGGTAAGGTGGGATGACATTGAT-GCGAATGGACATCAACAGCGCGTCTC 1111
Query 1514 GCCATGGGAGATCGAACCATCTGGTTCCATCTCCAATTCAGGCAGCTTCGTAACAACTGG 1573
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1112 ACCATGGGAGATCGAACCATCTGGTTCAATCTCCAATTCAGGCAGCTTCGTAACAACTGG 1171
Query 1574 TCCCAAGAGAAGCAGGATTGGCTTTTCCTCAGGAAAGCCTGATATCCCTGTCTCTGAGGG 1633
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1172 TCCCAAGAGAAGCAGGATTGGCTTTTCCTCAGGAAAGCCTGACATTCCTGTCTCTGAGGG 1231
Query 1634 GATTCGCGCCACAGACTTTGAGGAATCATTGAGATTCCAGAGGGTCTTGCAAGGTCAAGA 1693
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1232 GATTCGCGCCACAGACTTTGAGGAATCTTTGAGATTCCAGAGGGTCTTGCAAGGTCAAGA 1291
Query 1694 AATTTTTCCGGGTTTTATCAACACTTGTTCGGATGGTGGAGCCGGTGCCAGGAGAGGCCG 1753
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1292 AATTTTTCCGGGTTTTATCAACACTTGTTCGGATGGTGGAGCCGGTGCCAGGAGAGGCCG 1351
Query 1754 CTTCAAAGGAACAGAATTTGGTGACTCTTATGGTTTCCATAAGGTCTTGCAAGGTCAAGA 1813
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1352 CTTCAAAGGAACAGAATTTGGTGACTCTTATGGGTTCCATAAGGTCTTGCAAGGTCAAGA 1411
Query 1814 AACAGTTCCCGCCTACTCAATAACCGATCATCGGCAGCAGCACGGGTTGAGCCAGAGGAA 1873
|||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 1412 AACAGTTCCCGCTTACTCAATAACCGATCATC--C-GCAGCACGGGTTGAGCCAGAGGAA 1468
Query 1874 CATTTGGTGTGGGCCGTTCCAGAACTTTAGTACACGTATCCTCCCCCCATCTGTATCATC 1933
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1469 CATTTGGTGTGGGCCGTTCCAGAACTTTAGTACTCGTATCCTCCCCCCATCTGTGTCATC 1528
Query 1934 ATCACCCTCTTCCGTCTTGCTTACCAACTCGAACAGTCCTAACGGACGTCTGGAAGACCA 1993
||||||||||||||||||| | |||||| | |||||||||||||||||||| || || ||
Sbjct 1529 ATCACCCTCTTCCGTCTTGATAACCAACGCAAACAGTCCTAACGGACGTCTAGAGGATCA 1588
Query 1994 TCACGGAGGTTCAGGCAGATGCAGGCTGTTTGGTTTCCCATTAACCGACGAAACCACAGC 2053
||||||||| ||||||| ||||| |||||||||||||| |||||||| |||||||||||
Sbjct 1589 TCACGGAGGCCCAGGCAGGTGCAGACTGTTTGGTTTCCCGTTAACCGAGGAAACCACAGC 1648
Query 2054 AGTTGCATCTGCGACGGCTGTCCCCTGCGTTGAAGGGAATTCCATGAAAGGTGCGTCAGC 2113
||||||||||||||| | |||||| || ||||| ||||||||||| |||||||| |||||
Sbjct 1649 AGTTGCATCTGCGACAGTTGTCCCATGTGTTGACGGGAATTCCATAAAAGGTGCTTCAGC 1708
Query 2114 TGTTCAAAGCAATCATCATCATTCGCAAGGAAGGGACATCTATGCAATGAGAGACATGTT 2173
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1709 TGTTCAAAGCAATCATCATCATTCGCAGGGAAGAGACATCTATGCAATGAGAGACATGTT 1768
Query 2174 GCTAGACATTGCTCTCTAGAAGGGTTCTTTGGTTTCTGTGT 2214
||||||||||||||||||| || |||| |||||| |||||
Sbjct 1769 GCTAGACATTGCTCTCTAG--GG-TTCTGTGGTTTATGTGT 1806
Score = 1306 bits (707), Expect = 0.0
Identities = 785/821 (96%), Gaps = 12/821 (1%)
Strand=Plus/Plus
Query 346 tctctgtttctctctctttaATGGGTGGTTTAATCGATCTGAACGTGATGGAGACGGAGG 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCTCTGTTTCTCTCTCTTTAATGGGTGGTTTAATCGATCTGAACGTGATGGAGACGGAGG 60
Query 406 AAGACGAAACGCAAACGCAAACACCGTCTTCAGCTTCTGGGTCTGTCTCTCCTACTTCGT 465
|||| ||||| ||||||| || | || | | | |||||||||||||| ||||||||||
Sbjct 61 AAGATGAAACACAAACGC-AA-A-CG-C--C-G--TCTGGGTCTGTCTCGCCTACTTCGT 111
Query 466 CTTCTT---CAGCTTCTGTGTCTGTGGTGTCTTCGAATTCTGCTGGTGGAGGGGTTTGTT 522
|||||| |||| |||| ||||||||||||||||| ||| | ||| |||||||||||||
Sbjct 112 CTTCTTCAGCAGCGTCTGCGTCTGTGGTGTCTTCGAGTTCAGTTGGAGGAGGGGTTTGTT 171
Query 523 TGGAGCTGTGGCATGCTTGTGCTGGACCCCTTATCTCTCTACCAAAAAGAGGAAGCCTTG 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 172 TGGAGCTGTGGCATGCTTGTGCTGGACCCCTTATCTCTCTACCAAAAAGAGGAAGCCTTG 231
Query 583 TGTTGTATTTCCCTCAGGGACATTTGGAACAAGCCCCCGATTTCTCCGCCGCGATTTACG 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 232 TGTTGTATTTCCCTCAGGGACATTTGGAACAAGCCCCCGATTTCTCCGCCGCGATTTACG 291
Query 643 GGCTCCCTCCTCACGTGTTCTGTCGTATTCTCGATGTTAAGCTTCACGCAGAGACGACTA 702
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 GGCTACCTCCTCACGTGTTCTGTCGTATTCTCGATGTTAAGCTTCACGCAGAGACGACTA 351
Query 703 CAGATGAAGTTTATGCTCAAGTCTCTCTTCTTCCTGAGTCAGAGGACATTGAGAGGAAGG 762
|||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 352 CAGATGAAGTTTATGCTCAAGTCTCTCTTCTTCCTGAGTCCGAGGACATTGAGCGGAAGG 411
Query 763 TGCGTGAAGGAATTATAGATGTTGATGGTGGAGAGGAAGATTATGAAGTGCTTAAGAGGT 822
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 TGCGTGAGGGAATTATAGATGTTGATGGTGGAGAGGAAGATTATGAAGTGCTTAAGAGGT 471
Query 823 CTAATACTCCTCACATGTTTTGCAAAACCCTTACTGCTTCTGATACAAGCACCCATGGTG 882
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 472 CTAATACTCCTCACATGTTTTGCAAAACCCTCACTGCTTCTGATACAAGCACCCATGGTG 531
Query 883 GTTTCTCTGTTCCTCGCCGAGCTGCTGAGGATTGCTTCCCTCCTCTGGACTATAGCCAGC 942
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 GCTTCTCTGTTCCTCGCCGAGCTGCTGAGGATTGCTTCCCTCCTCTGGACTATAGCCAGC 591
Query 943 CCCGGCCTTCTCAGGAGCTTCTTGCTAGGGATCTTCATGGCCTGGAGTGGCGATTTCGCC 1002
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 592 CCCGTCCTTCTCAGGAGCTTCTTGCTAGGGATCTTCATGGCTTGGAGTGGCGATTTCGCC 651
Query 1003 ACATTTATCGAGGGCAACCTAGGAGGCATTTGCTCACTACCGGGTGGAGTGCGTTTGTGA 1062
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 652 ACATTTATCGAGGGCAACCTAGGAGGCATTTGCTCACTACCGGGTGGAGTGCATTTGTGA 711
Query 1063 ACAAGAAGAAGCTTGTCTCTGGTGATGCTGTGCTTTTCCTTAGAGGAGATGATGGCAAAC 1122
|||||||||||||||| || || ||||||||||||||||||||||| |||||||||||||
Sbjct 712 ACAAGAAGAAGCTTGTTTCCGGAGATGCTGTGCTTTTCCTTAGAGGTGATGATGGCAAAC 771
Query 1123 TGCGACTGGGAGTTAGAAGAGCTTCTCAAATCGAAGGCACC 1163
||||| | |||||||||||||||||||||||||||||||||
Sbjct 772 TGCGATTAGGAGTTAGAAGAGCTTCTCAAATCGAAGGCACC 812
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89169263545
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5