BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G33860.1 Length=2367 Score E Sequences producing significant alignments: (Bits) Value Ahg933989 jgi|Araly1|933989|scaffold_401977.1 1469 0.0 > Ahg933989 jgi|Araly1|933989|scaffold_401977.1 Length=1807 Score = 1469 bits (795), Expect = 0.0 Identities = 935/1001 (93%), Gaps = 15/1001 (1%) Strand=Plus/Plus Query 1222 CTCATGCCATATCGACCCATAGCGTTTTCAGCATTTCCTACAAC----CCCAA---GGCA 1274 ||||||||||||| || ||||||||||||||||||| ||||||| | || |||| Sbjct 813 CTCATGCCATATCAACTCATAGCGTTTTCAGCATTTACTACAACAAATCATAATTGGGCA 872 Query 1275 AGCTGGTCAAACTTCATAATCCCTGCACCAAAGTTCTTGAAGGTTGTTGACTATCCCTTT 1334 ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||| Sbjct 873 AGCTGGTCAAATTTCATAATCCCTGCACCAAAGTTCTTGAAGATTGTTGACTATCCATTT 932 Query 1335 TGCATTGGGATGAGATTTAAAGCGAGGGTTGAATCTGAAGATGCATCTGAGAGAAGATCC 1394 |||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 933 TGCATTGGTATGAGATTTAAAGCGAGGGTTGAGTCTGAAGATGCCTCTGAGAGAAGATCC 992 Query 1395 CCTGGGATTATAAGTGGTATCAGCGACTTGGATCCAATCAGGTGGCCTGGTTCAAAATGG 1454 ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 993 CCTGGGATTATAACTGGTATCAGCGACTTGGATCCTATCAGGTGGCCTGGTTCAAAATGG 1052 Query 1455 AGATGCCTTTTGGTAAGGTGGGACGACATTG-TGGCAAATGGGCATCAACAGCGTGTCTC 1513 ||||||||| ||||||||||||| ||||||| | || ||||| ||||||||||| ||||| Sbjct 1053 AGATGCCTTCTGGTAAGGTGGGATGACATTGAT-GCGAATGGACATCAACAGCGCGTCTC 1111 Query 1514 GCCATGGGAGATCGAACCATCTGGTTCCATCTCCAATTCAGGCAGCTTCGTAACAACTGG 1573 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1112 ACCATGGGAGATCGAACCATCTGGTTCAATCTCCAATTCAGGCAGCTTCGTAACAACTGG 1171 Query 1574 TCCCAAGAGAAGCAGGATTGGCTTTTCCTCAGGAAAGCCTGATATCCCTGTCTCTGAGGG 1633 |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct 1172 TCCCAAGAGAAGCAGGATTGGCTTTTCCTCAGGAAAGCCTGACATTCCTGTCTCTGAGGG 1231 Query 1634 GATTCGCGCCACAGACTTTGAGGAATCATTGAGATTCCAGAGGGTCTTGCAAGGTCAAGA 1693 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1232 GATTCGCGCCACAGACTTTGAGGAATCTTTGAGATTCCAGAGGGTCTTGCAAGGTCAAGA 1291 Query 1694 AATTTTTCCGGGTTTTATCAACACTTGTTCGGATGGTGGAGCCGGTGCCAGGAGAGGCCG 1753 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1292 AATTTTTCCGGGTTTTATCAACACTTGTTCGGATGGTGGAGCCGGTGCCAGGAGAGGCCG 1351 Query 1754 CTTCAAAGGAACAGAATTTGGTGACTCTTATGGTTTCCATAAGGTCTTGCAAGGTCAAGA 1813 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1352 CTTCAAAGGAACAGAATTTGGTGACTCTTATGGGTTCCATAAGGTCTTGCAAGGTCAAGA 1411 Query 1814 AACAGTTCCCGCCTACTCAATAACCGATCATCGGCAGCAGCACGGGTTGAGCCAGAGGAA 1873 |||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||| Sbjct 1412 AACAGTTCCCGCTTACTCAATAACCGATCATC--C-GCAGCACGGGTTGAGCCAGAGGAA 1468 Query 1874 CATTTGGTGTGGGCCGTTCCAGAACTTTAGTACACGTATCCTCCCCCCATCTGTATCATC 1933 ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct 1469 CATTTGGTGTGGGCCGTTCCAGAACTTTAGTACTCGTATCCTCCCCCCATCTGTGTCATC 1528 Query 1934 ATCACCCTCTTCCGTCTTGCTTACCAACTCGAACAGTCCTAACGGACGTCTGGAAGACCA 1993 ||||||||||||||||||| | |||||| | |||||||||||||||||||| || || || Sbjct 1529 ATCACCCTCTTCCGTCTTGATAACCAACGCAAACAGTCCTAACGGACGTCTAGAGGATCA 1588 Query 1994 TCACGGAGGTTCAGGCAGATGCAGGCTGTTTGGTTTCCCATTAACCGACGAAACCACAGC 2053 ||||||||| ||||||| ||||| |||||||||||||| |||||||| ||||||||||| Sbjct 1589 TCACGGAGGCCCAGGCAGGTGCAGACTGTTTGGTTTCCCGTTAACCGAGGAAACCACAGC 1648 Query 2054 AGTTGCATCTGCGACGGCTGTCCCCTGCGTTGAAGGGAATTCCATGAAAGGTGCGTCAGC 2113 ||||||||||||||| | |||||| || ||||| ||||||||||| |||||||| ||||| Sbjct 1649 AGTTGCATCTGCGACAGTTGTCCCATGTGTTGACGGGAATTCCATAAAAGGTGCTTCAGC 1708 Query 2114 TGTTCAAAGCAATCATCATCATTCGCAAGGAAGGGACATCTATGCAATGAGAGACATGTT 2173 ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 1709 TGTTCAAAGCAATCATCATCATTCGCAGGGAAGAGACATCTATGCAATGAGAGACATGTT 1768 Query 2174 GCTAGACATTGCTCTCTAGAAGGGTTCTTTGGTTTCTGTGT 2214 ||||||||||||||||||| || |||| |||||| ||||| Sbjct 1769 GCTAGACATTGCTCTCTAG--GG-TTCTGTGGTTTATGTGT 1806 Score = 1306 bits (707), Expect = 0.0 Identities = 785/821 (96%), Gaps = 12/821 (1%) Strand=Plus/Plus Query 346 tctctgtttctctctctttaATGGGTGGTTTAATCGATCTGAACGTGATGGAGACGGAGG 405 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 TCTCTGTTTCTCTCTCTTTAATGGGTGGTTTAATCGATCTGAACGTGATGGAGACGGAGG 60 Query 406 AAGACGAAACGCAAACGCAAACACCGTCTTCAGCTTCTGGGTCTGTCTCTCCTACTTCGT 465 |||| ||||| ||||||| || | || | | | |||||||||||||| |||||||||| Sbjct 61 AAGATGAAACACAAACGC-AA-A-CG-C--C-G--TCTGGGTCTGTCTCGCCTACTTCGT 111 Query 466 CTTCTT---CAGCTTCTGTGTCTGTGGTGTCTTCGAATTCTGCTGGTGGAGGGGTTTGTT 522 |||||| |||| |||| ||||||||||||||||| ||| | ||| ||||||||||||| Sbjct 112 CTTCTTCAGCAGCGTCTGCGTCTGTGGTGTCTTCGAGTTCAGTTGGAGGAGGGGTTTGTT 171 Query 523 TGGAGCTGTGGCATGCTTGTGCTGGACCCCTTATCTCTCTACCAAAAAGAGGAAGCCTTG 582 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 172 TGGAGCTGTGGCATGCTTGTGCTGGACCCCTTATCTCTCTACCAAAAAGAGGAAGCCTTG 231 Query 583 TGTTGTATTTCCCTCAGGGACATTTGGAACAAGCCCCCGATTTCTCCGCCGCGATTTACG 642 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 232 TGTTGTATTTCCCTCAGGGACATTTGGAACAAGCCCCCGATTTCTCCGCCGCGATTTACG 291 Query 643 GGCTCCCTCCTCACGTGTTCTGTCGTATTCTCGATGTTAAGCTTCACGCAGAGACGACTA 702 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 292 GGCTACCTCCTCACGTGTTCTGTCGTATTCTCGATGTTAAGCTTCACGCAGAGACGACTA 351 Query 703 CAGATGAAGTTTATGCTCAAGTCTCTCTTCTTCCTGAGTCAGAGGACATTGAGAGGAAGG 762 |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| Sbjct 352 CAGATGAAGTTTATGCTCAAGTCTCTCTTCTTCCTGAGTCCGAGGACATTGAGCGGAAGG 411 Query 763 TGCGTGAAGGAATTATAGATGTTGATGGTGGAGAGGAAGATTATGAAGTGCTTAAGAGGT 822 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 412 TGCGTGAGGGAATTATAGATGTTGATGGTGGAGAGGAAGATTATGAAGTGCTTAAGAGGT 471 Query 823 CTAATACTCCTCACATGTTTTGCAAAACCCTTACTGCTTCTGATACAAGCACCCATGGTG 882 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 472 CTAATACTCCTCACATGTTTTGCAAAACCCTCACTGCTTCTGATACAAGCACCCATGGTG 531 Query 883 GTTTCTCTGTTCCTCGCCGAGCTGCTGAGGATTGCTTCCCTCCTCTGGACTATAGCCAGC 942 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 532 GCTTCTCTGTTCCTCGCCGAGCTGCTGAGGATTGCTTCCCTCCTCTGGACTATAGCCAGC 591 Query 943 CCCGGCCTTCTCAGGAGCTTCTTGCTAGGGATCTTCATGGCCTGGAGTGGCGATTTCGCC 1002 |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 592 CCCGTCCTTCTCAGGAGCTTCTTGCTAGGGATCTTCATGGCTTGGAGTGGCGATTTCGCC 651 Query 1003 ACATTTATCGAGGGCAACCTAGGAGGCATTTGCTCACTACCGGGTGGAGTGCGTTTGTGA 1062 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 652 ACATTTATCGAGGGCAACCTAGGAGGCATTTGCTCACTACCGGGTGGAGTGCATTTGTGA 711 Query 1063 ACAAGAAGAAGCTTGTCTCTGGTGATGCTGTGCTTTTCCTTAGAGGAGATGATGGCAAAC 1122 |||||||||||||||| || || ||||||||||||||||||||||| ||||||||||||| Sbjct 712 ACAAGAAGAAGCTTGTTTCCGGAGATGCTGTGCTTTTCCTTAGAGGTGATGATGGCAAAC 771 Query 1123 TGCGACTGGGAGTTAGAAGAGCTTCTCAAATCGAAGGCACC 1163 ||||| | ||||||||||||||||||||||||||||||||| Sbjct 772 TGCGATTAGGAGTTAGAAGAGCTTCTCAAATCGAAGGCACC 812 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 89169263545 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5