BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G33870.1
Length=657
Score E
Sequences producing significant alignments: (Bits) Value
Ahg901221 jgi|Araly1|901221|Al_scaffold_0004_1871 1064 0.0
Ahg912687 jgi|Araly1|912687|Al_scaffold_0001_2941 715 0.0
> Ahg901221 jgi|Araly1|901221|Al_scaffold_0004_1871
Length=657
Score = 1064 bits (576), Expect = 0.0
Identities = 630/657 (96%), Gaps = 0/657 (0%)
Strand=Plus/Plus
Query 1 ATGGGAACATATAAAGCTGAAGACGATTACGATTACCTCTTCAAGGTTGTCTTAACGGGA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGAACATATAAAGCTGAAGACGATTACGATTACCTCTTCAAGGTTGTCTTAACGGGA 60
Query 61 GATTCCGGTGTAGGAAAATCAAATCTGCTATCCCGATTCACCAGAAACGACTTTAGCCAC 120
||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 61 GATTCCGGTGTCGGGAAATCAAATCTGCTATCCCGATTCACCAGAAACGATTTTAGCCAC 120
Query 121 GACTCACGCTCGACCATCGGTGTTGAATTTGCCACACGTAGCATCCAGGTCGACGACAAG 180
|||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||
Sbjct 121 GACTCACGCTCGACCATCGGTGTTGAGTTTGCCACACGTAGCATCCAAGTGGACGACAAG 180
Query 181 ATTGTCAAAGCTCAGATATGGGACACTGCCGGCCAAGAAAGGTATCGAGCCATCACGAGC 240
||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||
Sbjct 181 ATTGTCAAAGCTCAGATATGGGACACTGCTGGTCAAGAAAGGTATCGAGCCATCACTAGC 240
Query 241 GCTTATTACCGAGGAGCCGTTGGTGCATTACTAGTCTACGACGTGACACGGCACGTGACA 300
|| || || ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 241 GCGTACTATCGAGGAGCCGTTGGTGCGTTACTAGTCTACGACGTGACACGGCACGTGACA 300
Query 301 TTCGAGAACGTTGAAAGATGGCTAAAGGAGCTAAGAGACCACACGGACGCAAACACTGTG 360
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTCGAGAACGTTGAGAGATGGCTAAAGGAGCTAAGAGACCACACGGACGCAAACACTGTG 360
Query 361 ATTATGCTCGTAGGTAACAAAGCTGATTTGAATCACCTTCGAGCCATCTCTACGGAAGAA 420
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ATAATGCTCGTAGGTAACAAAGCTGATTTGAATCACCTTCGAGCCATCTCTACGGAAGAA 420
Query 421 GTGAAAGATTTTGCAGAGAGAGAGAACACTTTCTTTATGGAGACTTCGGCACTCGAAGCT 480
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 421 GTGAAAGATTTTGCAGAGAGAGAGAACACTTTCTTCATGGAGACTTCAGCACTCGAAGCT 480
Query 481 ATAAATGTAGAAAACGCTTTCACAGAGGTTCTTACACAGATTTACAGAGTTGTAAGCAAG 540
||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||
Sbjct 481 ATAAATGTAGAAAACGCTTTCACAGAGGTTCTTACTCAGATTTACAGAGTCGTTAGCAAG 540
Query 541 AAGGCTCTTGATGCTGGAGATGATCCAACCACTGCCTTGCCTAAAGGACAAATGATTAAC 600
|||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||
Sbjct 541 AAGGCTCTTGATGCTGGAGATGATCCTACCACTGCTTTGCCTAAAGGACAGATGATTAAT 600
Query 601 GTCGGAAGTAGAGATGATGTTTCAGCCGTCAAGAAATCTGGTTGCTGCGCGACATAG 657
|| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 601 GTAGGAAGCAGAGATGATGTTTCAGCCGTCAAGAAATCGGGTTGCTGCGCGACATAG 657
> Ahg912687 jgi|Araly1|912687|Al_scaffold_0001_2941
Length=657
Score = 715 bits (387), Expect = 0.0
Identities = 569/656 (87%), Gaps = 16/656 (2%)
Strand=Plus/Plus
Query 1 ATGGGAACATATAAAGCTGAAGACGATTACGATTACCTCTTCAAGGTTGTCTTAACGGGA 60
|||||| |||||| ||| ||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1 ATGGGAGCATATAGAGCAGAAGACGATTACGATTACCTCTTCAAGGTGGTCTTAACCGGA 60
Query 61 GATTCCGGTGTAGGAAAATCAAATCTGCTATCCCGATTCACCAGAAACGACTTT-AGCCA 119
|||||||| || |||||||| ||| || |||| || ||||||||||| || ||| |||||
Sbjct 61 GATTCCGGCGTCGGAAAATCTAATTTGTTATCTCGTTTCACCAGAAATGA-TTTCAGCCA 119
Query 120 CGACTCACGCT-CGACCATCGGTGTTGAATTTGCCACACGTAGCATCC-AGGTCGACGAC 177
||||||||| | ||||||||||||| ||||| ||||| |||||||||| | | ||| ||
Sbjct 120 CGACTCACG-TGCGACCATCGGTGTCGAATTCGCCACCCGTAGCATCCAATG-CGATGAT 177
Query 178 AAGATTGTCAAAGCTCAGATATGGGACACTGCCGGCCAAGAAAGGTATCGAGCCATCACG 237
|||||||| || ||||| || ||||| || ||||||||||||||||| ||||||||||||
Sbjct 178 AAGATTGTTAAGGCTCAAATCTGGGATACCGCCGGCCAAGAAAGGTACCGAGCCATCACG 237
Query 238 AGCGCTTATTACCGAGGAGCCGTTGGTGCATTACTAGTCTACGACGTGACACGGCACGTG 297
|||||||||||||||||||||||||||||||| || || || |||||||| || |||||
Sbjct 238 AGCGCTTATTACCGAGGAGCCGTTGGTGCATTGCTTGTTTATGACGTGACGCGTCACGTA 297
Query 298 ACATTCGAGAACGTTGAAAGATGGCTAAAGGAGCTAAGAGACCACACGGACGCAAACACT 357
|| ||||||||||| || |||||||||||||||||||| ||||||||||||||||| | |
Sbjct 298 ACTTTCGAGAACGTCGAGAGATGGCTAAAGGAGCTAAGGGACCACACGGACGCAAATATT 357
Query 358 GTGATTATGCTCGTAGGTAACAAAGCTGAT-TT-GAATCACCTTCGAGCCATCTCTACGG 415
|| ||||||||||| ||||||||||||||| || | |||||||||||||||||| || |
Sbjct 358 GTTATTATGCTCGTTGGTAACAAAGCTGATCTTCG--TCACCTTCGAGCCATCTCAACTG 415
Query 416 AAGAAG-TGAAAGATTTTGCAGAGAGAGAGAACACTTTCTTT-ATGGAGACTTCGGCACT 473
|||||| | || | |||||||||||||||||| || || ||| |||||||| || |||||
Sbjct 416 AAGAAGCT-AAGGCTTTTGCAGAGAGAGAGAATACCTT-TTTCATGGAGACATCTGCACT 473
Query 474 CGAAGCTA-TAAATGTAGAAAACGCTTTCACAGAGGTTCTTACACAGATTTACAGAGTTG 532
||||| | | ||||| || || |||||||| || ||||| || ||||||||||||||||
Sbjct 474 TGAAGC-AGTGAATGTTGATAATGCTTTCACCGAAGTTCTCACTCAGATTTACAGAGTTG 532
Query 533 TAAGCAAGAAGGCTCTTGATGCTGGAGATGATCCAACCACTGCCTTGCCTAAAGGACAAA 592
| ||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||
Sbjct 533 TTAGCAAGAAGGCTCTTGAAGCTGGAGATGATCCAACCACCGCTTTGCCTAAAGGACAAA 592
Query 593 TGATTAACGTCGGAAGTAGAGATGATGTTTCAGCCGTCAAGAAATCTGGTTGCTGC 648
||||||| || ||||| |||||||| | |||||||| |||||| | |||||||||
Sbjct 593 TGATTAATGTTGGAAGCCGAGATGATATCTCAGCCGTTAAGAAACCCGGTTGCTGC 648
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24093683544
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5