BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G33880.1
Length=1527
Score E
Sequences producing significant alignments: (Bits) Value
Ahg901222 jgi|Araly1|901222|Al_scaffold_0004_1872 1808 0.0
> Ahg901222 jgi|Araly1|901222|Al_scaffold_0004_1872
Length=1122
Score = 1808 bits (979), Expect = 0.0
Identities = 1088/1138 (96%), Gaps = 17/1138 (1%)
Strand=Plus/Plus
Query 182 ATGGCTTCTTCGAATAGACACTGGCCAAGCATGTTCAAGTCCAAACCTCATCCCCATCAA 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTTCTTCGAATAGACACTGGCCAAGCATGTTCAAGTCCAAACCTCATCCCCATCAA 60
Query 242 TGGCAACATGACATCAACTCTCCTCTCTTGCCTTCTGCTTCTCACCGATCTTCTCCTTTC 301
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 TGGCAACATGACATCAACTCTCCTCTCTTGCCTTCTGCTTCTCACCGATCTTCTCCCTTC 120
Query 302 TCTTCAGGATGTGAAGTGGAGAGGAGTCCAGAGCCAAAACCAAGATGGAATCCAAAGCCA 361
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 121 TCTTCAGGATGTGAAGTGGAGAGGAGTCCAGAGCCAAAACCAAGATGGAATCCAAAACCA 180
Query 362 GAGCAGATTCGGATACTTGAAGCAATCTTTAACTCCGGGATGGTGAATCCTCCAAGAGAG 421
||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||
Sbjct 181 GAGCAGATTCGGATACTTGAAGCAATCTTTAACTCAGGGATGGTGAATCCCCCTAGAGAG 240
Query 422 GAGATCAGGAGGATTAGGGCTCAGCTTCAAGAATACGGCCAAGTCGGTGATGCTAACGTC 481
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 241 GAGATCAGGAGGATTAGGGCTCAGCTTCAAGAATACGGCCAAGTCGGTGACGCTAACGTC 300
Query 482 TTCTACTGGTTCCAAAACCGTAAGTCCCGTAGTAAACACAAACTCCGCCTCCTCCACAAC 541
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 301 TTCTACTGGTTCCAAAACCGTAAGTCCCGTAGCAAACACAAACTCCGCCTCCTCCACAAC 360
Query 542 CACTCCAAACACTCTCTCCCTCAAACGCAACCGCAGCCGCAGCCGCAACCTTCGGcttcc 601
|||||||||||||||||||||||| ||||| | || |||||||||||||||||||||
Sbjct 361 CACTCCAAACACTCTCTCCCTCAACCGCAA-C-CA----CAGCCGCAACCTTCGGCTTCC 414
Query 602 tcttcctcttcctcctcctcttcctcctccAAATCCACCAAACCCCGAAAAAGCAAGAAC 661
||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 415 TCTTCGTCTTCCTCCTCCTCTTCCTCTTCCAAATCCACCAAACCCCGAAAAAACAAGAAC 474
Query 662 AAGAACAACACTAATCTCTCTTTGGGTGGTAGTCAAATGATGGGGATGTTTCCACCGGAA 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 AAGAACAACACTAATCTCTCTTTGGGTGGTAGTCAAATGATGGGGATGTTTCCACCGGAA 534
Query 722 CCGGCGTTTCTCTTCCCGGTCTCCACTGTCGGAGGGTTTGAAGGTATCACCGTCTCATCC 781
|||||||||||||| ||||| ||||| || ||||||||||||||||||||||||||||||
Sbjct 535 CCGGCGTTTCTCTTTCCGGTTTCCACAGTTGGAGGGTTTGAAGGTATCACCGTCTCATCC 594
Query 782 CAATTAGGGTTTCTCTCCGGTGATATGATTGAGCAACAAAAACCGGCTCCAACGTGTACC 841
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 595 CAATTAGGGTTTCTCTCCGGTGATATGATCGAGCAACAAAAACCAGCTCCAACGTGTACC 654
Query 842 GGACTCCTGCTGAGTGAGATCATGAACGGTAGTGTGAGTTATGGAACTCATCATCAACAA 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 GGACTCCTGCTGAGTGAGATCATGAACGGTAGTGTGAGTTATGGAACTCATCATCAACAA 714
Query 902 CACTTGAGTGAGAAAGAAGTTGAAGAAATGAGGATGAAGATGTTGCAACAGCCACAGACT 961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 715 CACTTGAGTGAGAAAGAAGTTGAAGAAATGAGGATGAAGATGTTGCAACAGCCACAGCCT 774
Query 962 CAGATTTGTTACGCTACCACTAATCATCAAATAGCTTCTTacaacaacaacaacaacaac 1021
|||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||| |
Sbjct 775 CAGATTTGTTACGCTACCACAAATCATCAAATAGCTTCTTACAACAACGACAATAACA-C 833
Query 1022 aaTAACATCATGCTTCATATTCCTCCCACTACTTCTACTGCCACCACTATTACTACTTCG 1081
||| |||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 834 -----CAT---GCTTCATATTCCTCCCACTACTTCTACTACTACCACTATTACTACTTCG 885
Query 1082 CATTCTCTCGCTACTGTCCCATCAACTTCGGACCAGCTTCAAGTTCAAGCGGACGC-ACG 1140
|||||||||||||||||||||||||||||||||||||||||||||||||||| || | |
Sbjct 886 CATTCTCTCGCTACTGTCCCATCAACTTCGGACCAGCTTCAAGTTCAAGCGGGTGCGA-G 944
Query 1141 AATAAGAGTTTTCATCAATGAAATGGAGCTTGAAGTGAGCTCAGGACCGTTCAATGTGAG 1200
|||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 945 AATAAGGGTTTTTATCAATGAAATGGAGCTTGAAGTGAGCTCGGGACCGTTCAATGTGAG 1004
Query 1201 GGATGCATTTGGGGAAGAGGTTGTTCTGATTAATTCCGCGGGTCAGCCCATTGTCACCGA 1260
||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||
Sbjct 1005 GGATGCATTTGGGGAAGAGGTCGTTCTCATTAATTCCGCGGGTCAGCCCATTGTAACCGA 1064
Query 1261 TGAATATGGCGTCGCTCTTCACCCTCTTCAACACGGAGCCTCGTACTATCTGATCTAG 1318
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1065 TGAATATGGCGTCGCTCTTCACCCACTTCAACACGGAGCCTCATACTATCTGATCTAG 1122
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57173457745
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5