BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G33980.1
Length=1990
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482345 jgi|Araly1|482345|fgenesh2_kg.4__1405__AT2G33980.1 1818 0.0
Ahg900013 jgi|Araly1|900013|Al_scaffold_0004_663 497 1e-139
> Ahg482345 jgi|Araly1|482345|fgenesh2_kg.4__1405__AT2G33980.1
Length=1626
Score = 1818 bits (984), Expect = 0.0
Identities = 1306/1450 (90%), Gaps = 68/1450 (5%)
Strand=Plus/Plus
Query 223 AAAGCTGCTGTCTTGATATGTCTCTTCGAAGGAGACGATGGTGATTTGCGTGTGATTCTT 282
||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||
Sbjct 178 AAAGCTGCTGTCTTGATATGTCTTTTCGAAGGAGACAATGGTGATTTGCGTGTGATCCTC 237
Query 283 ACTAAGAGGTCTTCCACATTGTCTACTCACTCAGGAGAAGTTTCTTTGCCAGGTGGTAAA 342
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 238 ACTAAGAGGTCTTCCACATTGTCTACTCACTCGGGAGAAGTTTCTTTGCCAGGTGGTAAA 297
Query 343 GCAGAAGAGCATGATAAGGATGATGGGATTACTGCAACTAGAGAGGCAGAGGAAGAGATT 402
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 298 GCAGAAGAGCATGATAAGGATGATGGGATTACTGCAACCAGAGAGGCAGAGGAAGAGATT 357
Query 403 GGATTAGACCCTTCGCTTGTTGATGTTGTTGCTTTCCTCGAACCATTTCTATCTCAGCAT 462
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 358 GGATTAGACCCTTTGCTTGTTGATGTTGTTGCTTTCCTCGAACCATTTCTGTCTCAGCAT 417
Query 463 CTGCTTAGAGTAATTCCTGTGGTAGGAATATTATGGGACAGAAAAGCATTCAATCCAACA 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 TTGCTTAGAGTAATTCCTGTGGTAGGAATATTATGGGACAGAAAAGCATTCAATCCAACG 477
Query 523 CCAAATCCTGCAGAAGTGGAAGCCGTGCTTGATGCACCCTTTGAAATGTTTCTGAAGGAT 582
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 478 CCAAATCCTGCAGAAGTGGAAGCCGTGTTTGATGCACCCTTTGAAATGTTTCTGAAGGAT 537
Query 583 GAGAACCGGAGATCCGAGGAGTTTGATTGGATGGGAGAAAAGCATTTGGTCCACTTCTTT 642
||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 538 GAGAATCGGAGATCCGAGGAGTTTGAGTGGATGGGGGAAAAGCATTTGGTCCACTTCTTT 597
Query 643 GATTACAAAACAGGAGATAGTGATTATGTTATATGGGGCTTAACTGCAAGAATCTTGATT 702
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 598 GATTACAAAACAGGAGATAGTGATTATGTTATATGGGGTTTAACTGCCAGAATCTTGATA 657
Query 703 AGAGCTGCAACAGTGGTTTATCAACGACCACCTGCTTTCATTGAACAGAAACCTAACTTG 762
||||||||||||||||||||||||||||||||||||||||||||||| ||| | | |
Sbjct 658 AGAGCTGCAACAGTGGTTTATCAACGACCACCTGCTTTCATTGAACATAAA-C---C-T- 711
Query 763 AAGTACTCCAAAATGAACCAGGCTACTCGTTTATATGGATGGCTGAAGCCGCTGGCAAAT 822
| ||| || | | | ||||| | | || || ||||||||||||||||
Sbjct 712 -A--ACT------TG-A--A-G-TACTC---CA-A--AAT-GCAGAAGCCGCTGGCAAAT 750
Query 823 TTACATGAATCTTGTGAAAATGGAAGATTACTAGGTCATGTCCCAGCATACTGCTTGCGT 882
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 751 TTACATGAATCTTGTGAAAATGGAAGATTACTAGGTCATGTCCCAGCATACTGCTTGCGT 810
Query 883 TATCTAGTTGGAATATCATCAAGATGATCGTGTT-TGTGCATATCTCAATCGTTTGTGCT 941
||||||| ||||||| ||||||||||||||| || ||||||||||||||||||||| ||
Sbjct 811 TATCTAGCTGGAATACCATCAAGATGATCGT-TTCTGTGCATATCTCAATCGTTTGACCT 869
Query 942 GAAAGACAAGCTCATTCTTGGAAAGTCTTTCAGCATGCTTTTTGGATGACTCTGGTATCG 1001
|||| |||||||||||||||||||||||||||||||||||||||||| | |||| ||||
Sbjct 870 GAAATACAAGCTCATTCTTGGAAAGTCTTTCAGCATGCTTTTTGGATAAATCTGATATCA 929
Query 1002 GAAATCAACAGATTTAAGTTATCTAATTCATCTGATGCAAG-AGCAAAGGTTAAAAAGCT 1060
|||||||||| ||||||| |||||||||||||||||| | | ||||||||||||||||||
Sbjct 930 GAAATCAACAAATTTAAGCTATCTAATTCATCTGATG-AGGTAGCAAAGGTTAAAAAGCT 988
Query 1061 AAAGGGAAGGCTGCTGCGTAGATCCATCTTCTAGATGCTTTGTTTAGCTCTTTCATGTTC 1120
||||| ||||||| ||||||||| || ||| | | |||| |||||||||||
Sbjct 989 AAAGGAAAGGCTGTTGCGTAGATGCA-----TAG-T-C------TAGCCCTTTCATGTTC 1035
Query 1121 TAATGTCTCAA-GAGCCACTGATGCAGGTAATAGGTTTAGAGCCATTTCTGATTGATTTG 1179
| ||||||||| || | ||| |||||||| ||||| |||||||||||||||||||||||
Sbjct 1036 TCATGTCTCAAGGA-CTACTTATGCAGGTTATAGGACTAGAGCCATTTCTGATTGATTTG 1094
Query 1180 CATCTAGGAAGGTGGTTTTGATTCCGTGAAACTAAGCCAGTTGATCTGATGACAAGGATA 1239
||| ||||||||| | ||| |||| ||||||||||||||||||||||||||||||| |||
Sbjct 1095 CATATAGGAAGGT-GATTTAATTCTGTGAAACTAAGCCAGTTGATCTGATGACAAGAATA 1153
Query 1240 CAATTTGGATGTGGTTTTCCTAGTGGA-C-CTTTACCACATAATCAAATATTGGATGTGC 1297
|||||||||| || ||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 1154 CAATTTGGATATGATTTTCCTAGTGGACCTCTTTACCACATAATCAAATATTGGATGTGC 1213
Query 1298 TCCTTGAAAACATGGGTAGCTCCCGTTTTGCAAGAAGTGTGTTTTT-T-GGTGAAACCCC 1355
||||||||||||| |||||||||||||||||||||||||| ||||| | |||||||||||
Sbjct 1214 TCCTTGAAAACATAGGTAGCTCCCGTTTTGCAAGAAGTGTTTTTTTGTTGGTGAAACCCC 1273
Query 1356 AACCATTTGACCTGAAAGTAAAGCTCGTTCTTGAAAAATCTGCCAGCAGGTGGGTAGTGC 1415
||||||||||||||||||||||||||| |||||||||||||| | || |
Sbjct 1274 AACCATTTGACCTGAAAGTAAAGCTCGGTCTTGAAAAATCTG---G----TG-------C 1319
Query 1416 TTGTGCTGCTTTCTGATGTTTTCCGGTTTTTCTGGTGGAACAAAT-TAATACATCTGATG 1474
||||||||||||||||| ||||| ||||| ||||||||| |||| ||||||||||||||
Sbjct 1320 TTGTGCTGCTTTCTGATATTTTCGGGTTTC-CTGGTGGAAGAAATCTAATACATCTGATG 1378
Query 1475 CGAAAGAAAAGCTCGTTCTTGCCTTCTTGGAGAATCTGGCAGCATAGCGCTTTGTCATGG 1534
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1379 CGAAAGAAAAGCTCGTTCTTGCCTTCTTGGAGAATCTGGCAGCATAGCGCTTTACCGTGG 1438
Query 1535 TCAATGTGTGTCTGATATTATCTGGTTGGAAATCTCAATCATATGACCTGATAGCAAAGG 1594
| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 1439 TGAAT-TGTGTCTGATATTATCTGGTTGGAAATCTCAATCATATGACCTGAAAGCATAGC 1497
Query 1595 AGCATTTGACTTCAGTTAAAAGAGCTACAGACACGCTGTTCTAATAGGTCTGAGATGAAA 1654
|||||||||||||| ||||| || |||| || ||| ||||||||||||| || |||
Sbjct 1498 CGCATTTGACTTCAGCTAAAACCTCTCCAGATACATTGTCCTAATAGGTCTGAAATCAAA 1557
Query 1655 TTCCGTGTAA 1664
||||||||||
Sbjct 1558 TTCCGTGTAA 1567
Score = 215 bits (116), Expect = 1e-54
Identities = 156/174 (90%), Gaps = 8/174 (5%)
Strand=Plus/Plus
Query 1 ATGAAGTCGGGAGCATCAGCCGCGTCGCCAACGGCGAAAAGCTTCAATTTTGGATCTTCC 60
||||||||||||||||||||||||||||||||||| ||| | ||||| ||||||||||||
Sbjct 1 ATGAAGTCGGGAGCATCAGCCGCGTCGCCAACGGCCAAAGGATTCAAATTTGGATCTTCC 60
Query 61 AGACTCTTAGCCTTGGCGCAGCAGCTGCGTGTATACAAGCCGCCGCTTTCGTCA-TCCTT 119
|||||||||||| |||||||||||||||||||||||||||||||||||| ||| | ||
Sbjct 61 AGACTCTTAGCCCTGGCGCAGCAGCTGCGTGTATACAAGCCGCCGCTTTATTCACTG-TT 119
Query 120 CGACGAGAG-GGAAGAGCTGCTTGCG-TACAAGGAAAGCACCA-GGAAATCGAT 170
||||||| | ||||||| ||| || | |||||||||||||||| |||| |||||
Sbjct 120 CGACGAG-GCGGAAGAGATGCGTG-GATACAAGGAAAGCACCACGGAA-TCGAT 170
> Ahg900013 jgi|Araly1|900013|Al_scaffold_0004_663
Length=486
Score = 497 bits (269), Expect = 1e-139
Identities = 301/317 (95%), Gaps = 0/317 (0%)
Strand=Plus/Plus
Query 314 CAGGAGAAGTTTCTTTGCCAGGTGGTAAAGCAGAAGAGCATGATAAGGATGATGGGATTA 373
|||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 170 CAGGAGAAATTTCTTTACCAGGTGGTAAAGCAGAAGAGAATGATAAGGATGATGGGATTA 229
Query 374 CTGCAACTAGAGAGGCAGAGGAAGAGATTGGATTAGACCCTTCGCTTGTTGATGTTGTTG 433
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 230 CTGCAACTAGAGAGGCAGAGGAAGAGATTGGTTTAGACCCTTCGCTTGTTGATGTTGCTG 289
Query 434 CTTTCCTCGAACCATTTCTATCTCAGCATCTGCTTAGAGTAATTCCTGTGGTAGGAATAT 493
|||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 290 CTTTCCTCGAGCCATTTCTGTCTCAGCATCTGCTTAGAGTAATTCCTGTAATAGGAATAT 349
Query 494 TATGGGACAGAAAAGCATTCAATCCAACACCAAATCCTGCAGAAGTGGAAGCCGTGCTTG 553
| |||||||||||||||||||||||||| |||| ||||||||| |||||||||||| |||
Sbjct 350 TGTGGGACAGAAAAGCATTCAATCCAACGCCAAGTCCTGCAGAGGTGGAAGCCGTGTTTG 409
Query 554 ATGCACCCTTTGAAATGTTTCTGAAGGATGAGAACCGGAGATCCGAGGAGTTTGATTGGA 613
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 410 ATGCACCCTTTGAAATGTTTCTGAAGGATGAGAACCGGAGATCCGAGGAGATTGATTGGA 469
Query 614 TGGGAGAAAAGCATTTG 630
|||| ||||||||||||
Sbjct 470 TGGGGGAAAAGCATTTG 486
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74809241180
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5