BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G33990.1
Length=1222
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933994 jgi|Araly1|933994|scaffold_401982.1 1236 0.0
> Ahg933994 jgi|Araly1|933994|scaffold_401982.1
Length=863
Score = 1236 bits (669), Expect = 0.0
Identities = 805/865 (93%), Gaps = 31/865 (4%)
Strand=Plus/Plus
Query 178 TTTTGGTGACAATTGATAGACTCTAAGATGGGTTCTGGGAATTTGATTAAGGCAATAATT 237
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 TTTTGGTGACAATTGATAGACTCTGAGATGGGTTCTGGGAATTTGATTAAGGCAATAATT 60
Query 238 AGATTGAAGAAGAGTAAACAAGGAA-C-T-------Gaaaagaaaaaaactagtgctgtg 288
||||||||||||||||||||||||| | | || |||||||||||||||||||||
Sbjct 61 AGATTGAAGAAGAGTAAACAAGGAACCATCAAAAGCGAGAAGAAAAAAACTAGTGCTGTG 120
Query 289 aaaccaaaaaaaGGTTCCAAGAAGAAGGG---T-A-----CATCACTAGTTACTCGTAGT 339
||||| ||||||||||||||||||||| | | |||||||||||||||| |||
Sbjct 121 AAACC---AAAAGGTTCCAAGAAGAAGGGTACTCATTCTTCATCACTAGTTACTCGAAGT 177
Query 340 GAGGATTGGGCTGCTACTCGGATTCAGACTGCTTTTAAAGCCTATAAGGCTAGAAAAAGC 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 GAGGATTGGGCTGCTACTCGGATTCAGACTGCTTTTAAAGCCTATAAGGCTAGAAAAAGC 237
Query 400 TTACGGCGTCTAAAAGGAATTGCAAGAGCAAAGTTATCAACTGAGAAACAATCTGTGAAG 459
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 238 TTACGGCGTCTAAAAGGAATTGCAAGAGCAAAGTTGTCAACTGAGAAACATTCTGTGAAG 297
Query 460 AACCAAGCTGTGGTCACATTGAGGTATCTTCACTCATGGAGTAAAATACAGTCAGAGATA 519
|||||||| || ||||||||| ||||||| ||||||||||||||||||||||| ||||||
Sbjct 298 AACCAAGCGGTTGTCACATTGCGGTATCTCCACTCATGGAGTAAAATACAGTCGGAGATA 357
Query 520 AAGGCTCGCCGAGTTTGCATGGTAACCGAATGGCGACTGAAGAATAAAAGATTAGAGCAT 579
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||
Sbjct 358 AAGGCTCGCCGAGTTTGTATGGTAACCGAATGGCGACTGAAGAATAAGAGATTAGAACAT 417
Query 580 CAGCAAAAGCTTGAGGCAAAGCTTCATGATGTTGAGGTTGAATGGAATGGTGGGTCAGAG 639
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 CAGCAAAAGCTTGAAGCAAAGCTTCATGATGTTGAGGTTGAATGGAATGGTGGGTCAGAG 477
Query 640 ACAAAAGATGAAATCTTGGAGAGGATACTTCAAAGGGAAGAAGCGACGATTAAGCGAGAA 699
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 478 ACAAAAGATGAAATCTTGGAGAGGATACTTCAAAGGGAAGAAGCTACGATTAAGCGAGAA 537
Query 700 AGAGCCTTGGCATATGCTTTCTCTCATCAGTGGAAAGCTGATGGTAAGACTCAGTGGTTG 759
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 538 AGAGCCTTGGCATATGCTTTCTCTCATCAGTGGAAAGCCGATGGTAAGACTCAGTGGCTG 597
Query 760 GGAAGTTATGAGCTAGGAAACACTAATTGGGGTTGGAGCTGGAAAGAGCGTTGGATATCT 819
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 598 GGGAGTTATGAGCTGGGAAACACTAATTGGGGTTGGAGCTGGAAAGAGCGTTGGATTTCT 657
Query 820 GCTCGGCCTTGGGAAGTAAGATATTCAGTGACTCCTAAGAAACCAAAGAGCTCAAAGACA 879
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 GCTCGGCCTTGGGAAGTAAGATATTCAGTGACTCCTAAGAAACCAAAGAGCTCAAAGACA 717
Query 880 G--------A-CTCAAATTCACCAGCAAAGAGAACAGTGTCATTATCATCAGTTCCAGCC 930
| | |||||||||||| || ||||||||||||||||||| |||||||| ||||
Sbjct 718 GTTTGTTGCAACTCAAATTCACCGGCGAAGAGAACAGTGTCATTATTATCAGTTCGAGCC 777
Query 931 AAAACTCCGTTTCCTGGAGCTAGAAACACAGTGAAACCGCGGAGATTGTCATTTCCAGGT 990
||| |||| |||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 778 AAAGCTCCATTTCCTGGAGCTAGAAACACAGTGAAACCGCGGAGATTGTCATTCCCGGGA 837
Query 991 GCTTGAAGTGAAGTTAAACTTTGTT 1015
||||||||||||||||| |||||||
Sbjct 838 GCTTGAAGTGAAGTTAA-CTTTGTT 861
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45633131649
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5