BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G33990.1 Length=1222 Score E Sequences producing significant alignments: (Bits) Value Ahg933994 jgi|Araly1|933994|scaffold_401982.1 1236 0.0 > Ahg933994 jgi|Araly1|933994|scaffold_401982.1 Length=863 Score = 1236 bits (669), Expect = 0.0 Identities = 805/865 (93%), Gaps = 31/865 (4%) Strand=Plus/Plus Query 178 TTTTGGTGACAATTGATAGACTCTAAGATGGGTTCTGGGAATTTGATTAAGGCAATAATT 237 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1 TTTTGGTGACAATTGATAGACTCTGAGATGGGTTCTGGGAATTTGATTAAGGCAATAATT 60 Query 238 AGATTGAAGAAGAGTAAACAAGGAA-C-T-------Gaaaagaaaaaaactagtgctgtg 288 ||||||||||||||||||||||||| | | || ||||||||||||||||||||| Sbjct 61 AGATTGAAGAAGAGTAAACAAGGAACCATCAAAAGCGAGAAGAAAAAAACTAGTGCTGTG 120 Query 289 aaaccaaaaaaaGGTTCCAAGAAGAAGGG---T-A-----CATCACTAGTTACTCGTAGT 339 ||||| ||||||||||||||||||||| | | |||||||||||||||| ||| Sbjct 121 AAACC---AAAAGGTTCCAAGAAGAAGGGTACTCATTCTTCATCACTAGTTACTCGAAGT 177 Query 340 GAGGATTGGGCTGCTACTCGGATTCAGACTGCTTTTAAAGCCTATAAGGCTAGAAAAAGC 399 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 178 GAGGATTGGGCTGCTACTCGGATTCAGACTGCTTTTAAAGCCTATAAGGCTAGAAAAAGC 237 Query 400 TTACGGCGTCTAAAAGGAATTGCAAGAGCAAAGTTATCAACTGAGAAACAATCTGTGAAG 459 ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| Sbjct 238 TTACGGCGTCTAAAAGGAATTGCAAGAGCAAAGTTGTCAACTGAGAAACATTCTGTGAAG 297 Query 460 AACCAAGCTGTGGTCACATTGAGGTATCTTCACTCATGGAGTAAAATACAGTCAGAGATA 519 |||||||| || ||||||||| ||||||| ||||||||||||||||||||||| |||||| Sbjct 298 AACCAAGCGGTTGTCACATTGCGGTATCTCCACTCATGGAGTAAAATACAGTCGGAGATA 357 Query 520 AAGGCTCGCCGAGTTTGCATGGTAACCGAATGGCGACTGAAGAATAAAAGATTAGAGCAT 579 ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||| Sbjct 358 AAGGCTCGCCGAGTTTGTATGGTAACCGAATGGCGACTGAAGAATAAGAGATTAGAACAT 417 Query 580 CAGCAAAAGCTTGAGGCAAAGCTTCATGATGTTGAGGTTGAATGGAATGGTGGGTCAGAG 639 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 418 CAGCAAAAGCTTGAAGCAAAGCTTCATGATGTTGAGGTTGAATGGAATGGTGGGTCAGAG 477 Query 640 ACAAAAGATGAAATCTTGGAGAGGATACTTCAAAGGGAAGAAGCGACGATTAAGCGAGAA 699 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 478 ACAAAAGATGAAATCTTGGAGAGGATACTTCAAAGGGAAGAAGCTACGATTAAGCGAGAA 537 Query 700 AGAGCCTTGGCATATGCTTTCTCTCATCAGTGGAAAGCTGATGGTAAGACTCAGTGGTTG 759 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || Sbjct 538 AGAGCCTTGGCATATGCTTTCTCTCATCAGTGGAAAGCCGATGGTAAGACTCAGTGGCTG 597 Query 760 GGAAGTTATGAGCTAGGAAACACTAATTGGGGTTGGAGCTGGAAAGAGCGTTGGATATCT 819 || ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 598 GGGAGTTATGAGCTGGGAAACACTAATTGGGGTTGGAGCTGGAAAGAGCGTTGGATTTCT 657 Query 820 GCTCGGCCTTGGGAAGTAAGATATTCAGTGACTCCTAAGAAACCAAAGAGCTCAAAGACA 879 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 658 GCTCGGCCTTGGGAAGTAAGATATTCAGTGACTCCTAAGAAACCAAAGAGCTCAAAGACA 717 Query 880 G--------A-CTCAAATTCACCAGCAAAGAGAACAGTGTCATTATCATCAGTTCCAGCC 930 | | |||||||||||| || ||||||||||||||||||| |||||||| |||| Sbjct 718 GTTTGTTGCAACTCAAATTCACCGGCGAAGAGAACAGTGTCATTATTATCAGTTCGAGCC 777 Query 931 AAAACTCCGTTTCCTGGAGCTAGAAACACAGTGAAACCGCGGAGATTGTCATTTCCAGGT 990 ||| |||| |||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 778 AAAGCTCCATTTCCTGGAGCTAGAAACACAGTGAAACCGCGGAGATTGTCATTCCCGGGA 837 Query 991 GCTTGAAGTGAAGTTAAACTTTGTT 1015 ||||||||||||||||| ||||||| Sbjct 838 GCTTGAAGTGAAGTTAA-CTTTGTT 861 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45633131649 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5